PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019391.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 753aa MW: 83530.5 Da PI: 5.4006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019391.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.6e-14	525	571	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ PCP019391.1 525 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 571 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MRISAMTNLL VQISGVEGEW VKRALIALIR PCAHQQRRRA RFQLNFLGNP LHSKTVEVVD 60 VVRRTRGEIG PRGTSWKAAA RGELEGEEEE DGYYNGAIKT RKTVQPMEVS AEEASLQRSQ 120 QLRELYDSLS AGETNQPPAR RPCASLSPED LTESEWFYLM CVSFSFPPGV GLPGKAYARR 180 QHVWLTGANE VDSKTFSRAI LAKSARIQTV VCIPLLGGVV EFGTTERVPE DHAFVQRVKT 240 FFVDHHHPPP PKPALSEHST SNPTTSSDHP HFHSSNLLPA MSTDPPLNAA QEDEEDEEDD 300 NQEEDDEAES DSEAETGPNG GAVVPAANPP QALAAVAEPS ELMQLEMSED IRLGSPDDAS 360 NNLDSDFHLL ALSQSRNPAD QQRQADSYRA ESTRRWPSVQ EPLSSGLQPP HAGPLALEEL 420 TNDDTHYSET VSTILQGQST RWTMNSSTDY AVCSTQSAFA KWSSRVDHHL LMPAEGTSQW 480 LLKYILFSVP FLHSKYRDEN SPKSHEGEAS TRLRKGTPQD ELSANHVLAE RRRREKLNER 540 FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKIQDLEAR NVPMEDDQRS RSSGEIQRSS 600 SCKDLRSGLP VVERTQAGHG SEKRKLRIVE GSGGVAIGKP KAMEDLPPPL PPPPPQPEPS 660 PTPMVTGTSL EVSIIESDGL LELQCPYREG LLLDVMQTLR ELRIETTVVQ SSLNNGYFVA 720 ELRAKVKDNV SGKKISITEV KRVINQIIPQ SDS

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MRISAMTNLL VQISGVEGEW VKRALIALIR PCAHQQRRRA RFQLNFLGNP LHSKTVEVVD  60
VVRRTRGEIG PRGTSWKAAA RGELEGEEEE DGYYNGAIKT RKTVQPMEVS AEEASLQRSQ  120
QLRELYDSLS AGETNQPPAR RPCASLSPED LTESEWFYLM CVSFSFPPGV GLPGKAYARR  180
QHVWLTGANE VDSKTFSRAI LAKSARIQTV VCIPLLGGVV EFGTTERVPE DHAFVQRVKT  240
FFVDHHHPPP PKPALSEHST SNPTTSSDHP HFHSSNLLPA MSTDPPLNAA QEDEEDEEDD  300
NQEEDDEAES DSEAETGPNG GAVVPAANPP QALAAVAEPS ELMQLEMSED IRLGSPDDAS  360
NNLDSDFHLL ALSQSRNPAD QQRQADSYRA ESTRRWPSVQ EPLSSGLQPP HAGPLALEEL  420
TNDDTHYSET VSTILQGQST RWTMNSSTDY AVCSTQSAFA KWSSRVDHHL LMPAEGTSQW  480
LLKYILFSVP FLHSKYRDEN SPKSHEGEAS TRLRKGTPQD ELSANHVLAE RRRREKLNER  540
FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKIQDLEAR NVPMEDDQRS RSSGEIQRSS  600
SCKDLRSGLP VVERTQAGHG SEKRKLRIVE GSGGVAIGKP KAMEDLPPPL PPPPPQPEPS  660
PTPMVTGTSL EVSIIESDGL LELQCPYREG LLLDVMQTLR ELRIETTVVQ SSLNNGYFVA  720
ELRAKVKDNV SGKKISITEV KRVINQIIPQ SDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	530	535	ERRRRE
2	531	536	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-80	bHLH family protein