PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1103aa    MW: 120049 Da    PI: 5.3908
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018548.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08450477127
                  --S---SGGGGTS.--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                  +kt+lC+ff+r   tC +G+ C++aHg+
  PCP018548.1 450 WKTSLCSFFRREAkTCGHGSECRYAHGE 477
                  8**********99*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    
MGNFGSTTSG GRRRHRPQPQ MSGGTHVFAA SPPPHASQYP NGPDSNPPQY RQYPSLYPNG  60
SNLNPPQFFQ YPGFHPPPPV PGPYPQSFHG TGVYMGPTPA NWVHGQFPFG APPPPPQGAP  120
FVEHQKTVTI KNDVNIKKDS LRVEPDEENP GRFVVAFTFD AAAPGSMTVM FFAKEDVDCK  180
LIATKEGLLK SVTVPFEKGL GQKFRQPSGT GIDFSVFEDI GLTKEGDVEV YPLVVKAESF  240
PLNDGERESD GNSAGNSQIT QAVFEKKENG EYKVRVMKQI LWVNGMRYEL QEIFGIGNSV  300
ENDQNGNDSG KECIICLSEP RDTTVLPCRH MCMCSGCAKV LRFQTNRCPV CRQPVDRLLE  360
IKTTPLLSHS KLADNSITFA MSSTPTPTAE PSATELLNPP SPLNGHGSTD QPQPPQDPAT  420
QPPDDVVSGD KRKREVNDDV QNPSAAPPLW KTSLCSFFRR EAKTCGHGSE CRYAHGEAEL  480
RPRPDNTWDP TSERAKKQKL EEEIEGCVAL DNVMMTEAID EDGDGGDAGG LDPELSKCLG  540
VGFKSAKKKK GMALGFVSFE NAEQLQNAVK DLEGISIGNK VMKVADVIPR SFEKRTKSIM  600
APQIPGVGLD GENVEDSMTA NGAEDGDGLT GRSARKVVTP LAHMSYDDQL EHKKSSLMQI  660
LKRLTRNARK ACPDGIPLPE WILKSREIGG LPCSLEGILA SPVVKGYRNK CEFSVGYSLQ  720
GKITVGFMLG NFREGVTAVE EPFDCPNVSR ISSQYASIFK EFLQHSSLPI WNRFKNIGFW  780
RQLTVREGRK PGIATDSEHC EANIMEVMLI VQVSSSGFDD AQITSEYERL AQAFAAGAAA  840
SSPSLPLMFL VIQDHQGISN AAPADAPLRS LSIPKAEGGS ETQSADNVVE PKIHDYINNL  900
KFCISPTAFF QVNTPAAEKL YSLAGDWAQL GPDTLLFDVC CGTGTIGLTL AHHVGMVVGI  960
EMNASAVSDA RRNSEINDIK NCRFVCAKAE DVMRSLLEEY AIAPQKQDDH VTEGSDKVIV  1020
TEGEKAISMD NKPNPEESSS HELDTASEGL EIDKQEVRSQ PQSSCTSEKG KTPVKCFSNV  1080
VAIVDPPRNG LHPTVSNTLV HSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein