PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018504.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 397aa MW: 45121.1 Da PI: 4.4484

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018504.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	163	247	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+++ + t +++s+++yf +++ PCP018504.1 163 WTEHETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERAKFAE-TGGATSKWVYFAKMD 247 ***********************************762678********************998.689999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDDTEDDARY PPNLYGGNHQ QGYGSSQRPK LPARGGGPYP RPVRNDYADD DEEDETDDDE 60 ELGEEEEDNN GRNGFPSVHK GVGDDDHEDD SDDEDDEDDE EDNKMMVRRL DDDDLKTHPK 120 KRKLKSLISS YEFAPRLPAP PAAAAAPSAP KQSIGGRNAL TDWTEHETFV LLDAWGDRFL 180 QRGKKSLRSE EWQEVAEKVS EVSKIERTDT QCRNRLDTLK KKYKKERAKF AETGGATSKW 240 VYFAKMDMLM SSLQQQAGLS CGLDSGEYVF MNPKVYLNRA NGLDEMRDSP GNSESAEGGD 300 DDSDGLPPKK RRYGRENDDR GSFRLLADSI QKFSDIYEKI ENSKRKQMAE LEKMRMDFHR 360 DLELQKRQIM ERAQAEIAKI QHGDDEENDN SAENASG

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDDTEDDARY PPNLYGGNHQ QGYGSSQRPK LPARGGGPYP RPVRNDYADD DEEDETDDDE  60
ELGEEEEDNN GRNGFPSVHK GVGDDDHEDD SDDEDDEDDE EDNKMMVRRL DDDDLKTHPK  120
KRKLKSLISS YEFAPRLPAP PAAAAAPSAP KQSIGGRNAL TDWTEHETFV LLDAWGDRFL  180
QRGKKSLRSE EWQEVAEKVS EVSKIERTDT QCRNRLDTLK KKYKKERAKF AETGGATSKW  240
VYFAKMDMLM SSLQQQAGLS CGLDSGEYVF MNPKVYLNRA NGLDEMRDSP GNSESAEGGD  300
DDSDGLPPKK RRYGRENDDR GSFRLLADSI QKFSDIYEKI ENSKRKQMAE LEKMRMDFHR  360
DLELQKRQIM ERAQAEIAKI QHGDDEENDN SAENASG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	LKTHPKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-73	Trihelix family protein