PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018323.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 1003aa MW: 112573 Da PI: 7.6001

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018323.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.8	2.8e-08	245	297	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ +++ PCP018323.1 245 TRSKTRADKDREVADFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGS-ERE 297 46778889999*************************************85.333 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MGDKKGETTK KNPQQPQQQQ QQISPSRNDQ QPPPTAVNIS GAAAAAGVSF NIPPPLFVPT 60 GTPTTSSSSP FDQHQFEAAV NPKRPRFTST TGQWKLLPSP SSQQKQPQIP ILPSESNPSQ 120 SPNPKNAQLS QPHVSTTGAA SSSDTASSWP PHSPLPSLSA TSGHDTNKTE EGDPQNPVHH 180 HHQFRKGKYV SPVWKPNEML WLARGWRIQY QGGAARGSSD HGSGSSSRAE QLQTETGGAT 240 TTAHTRSKTR ADKDREVADF LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGSEREQLG 300 KSYFRLSPYE RKLHRLPASF DEEVFEELSQ FMGSRMRTPQ SRLGSVGDDS RSALVMTRNL 360 PQPPSFKEDD FPLSGRGKQL MIMSGGGEPF YHGGRGTLLG FHHHDQSSLD FATGLSSSSS 420 KELRRIGKIR MTWEESVSLW AEEGEHHRGR LRLQGSSFLN ADELTFFDDS MVACTMEAFE 480 DGPFRGFSVD RFVSGQQVKV FGRRRPSSAT SGFNDKVQLP LPESSSRSMP PFEFQDPTEY 540 YVGCLRVPPP SLPTLSELQW YVQEPLPEEL RFPLRKDVYR DLPQGKEIFF TTSTELLDCR 600 AIIYDILSPI IRTNPSLSAA TATSRDSFIP IWDDCINRIV SKFCSLEMVF IRKPNASSPT 660 EPLQDQWPNV TGFVRSFCLW RGEEADNLRD DRDINPSSSI VEKLLWTYMD LPYILGYYAI 720 GHVVTFCALS RVQDRIIRTD LGTVDLSSTS ERLKALVPCF RIASLLPLLA DRCFNISSNC 780 NGGSYKMPPF SDFERIDMGN GNAIEMTPTT MTRFYSNIRK ATAVKEIYDF LDQRIPHAEY 840 IHRSLEKDWA LVFKPRGCKF KPTNCDQLVE ALMYVTKALV ALHDLSFMHR DICWEKVMRN 900 ERDNEWFVCG FEEAVGAPQI YPHSVGMAGD AVARGRHAPE MERGLHGVKV DVWGVGNLVR 960 SCGLTGVPKL LRELQNRCLD QNPEKRPTAA DCYHHLLQLQ SSL

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MGDKKGETTK KNPQQPQQQQ QQISPSRNDQ QPPPTAVNIS GAAAAAGVSF NIPPPLFVPT  60
GTPTTSSSSP FDQHQFEAAV NPKRPRFTST TGQWKLLPSP SSQQKQPQIP ILPSESNPSQ  120
SPNPKNAQLS QPHVSTTGAA SSSDTASSWP PHSPLPSLSA TSGHDTNKTE EGDPQNPVHH  180
HHQFRKGKYV SPVWKPNEML WLARGWRIQY QGGAARGSSD HGSGSSSRAE QLQTETGGAT  240
TTAHTRSKTR ADKDREVADF LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGSEREQLG  300
KSYFRLSPYE RKLHRLPASF DEEVFEELSQ FMGSRMRTPQ SRLGSVGDDS RSALVMTRNL  360
PQPPSFKEDD FPLSGRGKQL MIMSGGGEPF YHGGRGTLLG FHHHDQSSLD FATGLSSSSS  420
KELRRIGKIR MTWEESVSLW AEEGEHHRGR LRLQGSSFLN ADELTFFDDS MVACTMEAFE  480
DGPFRGFSVD RFVSGQQVKV FGRRRPSSAT SGFNDKVQLP LPESSSRSMP PFEFQDPTEY  540
YVGCLRVPPP SLPTLSELQW YVQEPLPEEL RFPLRKDVYR DLPQGKEIFF TTSTELLDCR  600
AIIYDILSPI IRTNPSLSAA TATSRDSFIP IWDDCINRIV SKFCSLEMVF IRKPNASSPT  660
EPLQDQWPNV TGFVRSFCLW RGEEADNLRD DRDINPSSSI VEKLLWTYMD LPYILGYYAI  720
GHVVTFCALS RVQDRIIRTD LGTVDLSSTS ERLKALVPCF RIASLLPLLA DRCFNISSNC  780
NGGSYKMPPF SDFERIDMGN GNAIEMTPTT MTRFYSNIRK ATAVKEIYDF LDQRIPHAEY  840
IHRSLEKDWA LVFKPRGCKF KPTNCDQLVE ALMYVTKALV ALHDLSFMHR DICWEKVMRN  900
ERDNEWFVCG FEEAVGAPQI YPHSVGMAGD AVARGRHAPE MERGLHGVKV DVWGVGNLVR  960
SCGLTGVPKL LRELQNRCLD QNPEKRPTAA DCYHHLLQLQ SSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein