PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018294.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 367aa MW: 38823.4 Da PI: 6.736

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018294.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.9	6.6e-69	128	279	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaesk 97 +sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a++++++++++++++ + r + k + ++l++ +++s++s PCP018294.1 128 SSGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQNQNQQQQQEQQIQFRGEnpKRLRDNSLACVRIPSNTS- 224 5789****************************************************999999987777766665523566778888889888875. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le + +P+evss+avfrcv+vs++dd +e++aYqtav+igGhvfkG+LydqG++ PCP018294.1 225 -GLELNPFPPEVSSPAVFRCVKVSAMDDVDEQFAYQTAVNIGGHVFKGLLYDQGID 279 .588999*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MAGLFCLGGR DQGPTSGDKQ AGEDQSGRVG GAAAEAAAGG GGGGGGGNLF LYRSSGEEQA 60 EIYNKGFEIW PSQYHPHQNL NYYSFGVDPS YNHRHLDNNS DGVSADDLSA GLRLTMMRGV 120 GLGGLGSSSG GMNCQDCGNQ AKKDCPHLRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQE 180 QFSALQQNQN QQQQQEQQIQ FRGENPKRLR DNSLACVRIP SNTSGLELNP FPPEVSSPAV 240 FRCVKVSAMD DVDEQFAYQT AVNIGGHVFK GLLYDQGIDG QYYPSSGGGG GESSSGGRGT 300 SHDHHQDGCG SGGGGGHPHH QQHDLVTVAA AGGTSGNPSS TLLDPSLFPA PLNAFMAGTQ 360 YFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MAGLFCLGGR DQGPTSGDKQ AGEDQSGRVG GAAAEAAAGG GGGGGGGNLF LYRSSGEEQA  60
EIYNKGFEIW PSQYHPHQNL NYYSFGVDPS YNHRHLDNNS DGVSADDLSA GLRLTMMRGV  120
GLGGLGSSSG GMNCQDCGNQ AKKDCPHLRC RTCCKSRGFQ CQTHVKSTWV PAAKRRERQE  180
QFSALQQNQN QQQQQEQQIQ FRGENPKRLR DNSLACVRIP SNTSGLELNP FPPEVSSPAV  240
FRCVKVSAMD DVDEQFAYQT AVNIGGHVFK GLLYDQGIDG QYYPSSGGGG GESSSGGRGT  300
SHDHHQDGCG SGGGGGHPHH QQHDLVTVAA AGGTSGNPSS TLLDPSLFPA PLNAFMAGTQ  360
YFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.1	8e-65	SRS family protein