PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018047.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 311aa    MW: 35180.2 Da    PI: 9.7727
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018047.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.1e-3941117278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls++++yhrrhkvCe hsk+++v+++g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  PCP018047.1  41 CLVDGCNSDLSKCRDYHRRHKVCELHSKTSKVTIKGQERRFCQQCSRFHSLVEFDEGKRSCRRRLDGHNKRRRKRQS 117
                  **************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEDGSRGKLK DPGVSMRKPS SSTTSLKRPR QPNNETKIAA CLVDGCNSDL SKCRDYHRRH  60
KVCELHSKTS KVTIKGQERR FCQQCSRFHS LVEFDEGKRS CRRRLDGHNK RRRKRQSESM  120
STNLGRFLSN YQGTRFLSFG NPQMCAANAV MNSPWGYALK PENDSVLLDN HSQLNETRRS  180
SYTYREKQIP FVQGFEYAHS EASVYQPFTN ANFALGNSSN SHRMFANGLY RDRESNCALS  240
LLSWTRATQE EIGLSHTAQS SSVCPAQSMI PRIHYNNVGV QDEAAISNLV SDGNSIGNLH  300
CQGKFQNSNY S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-47SBP family protein