PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018008.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 478aa MW: 53369.3 Da PI: 7.0957

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.9	1.3e-55	26	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdee+++ yL kkv ++++e+ +i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k PCP018008.1 26 LPPGFRFHPTDEEIITSYLIKKVINSRFEA-AAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNKikk 122 79************************99.88***********99999*************************************9764 PP NAM 96 kgel............vglkktLvfykgrapkgektdWvmheyrl 128 + + vg+kktLvfy+grapkgekt+Wvmheyrl PCP018008.1 123 Q--QqqggkgagggclVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 165 1..2467788888888*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE 60 ADLNKCEPWD LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKI 120 KKQQQQGGKG AGGGCLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLDGKIP PYNNLSKAAR 180 DEWVVCRVFH KNMGLKKTLS PTRMNSFGNI GDHDLLDCSS LPPLMDPTLD TSNVMTNKHS 240 SGHGDNDFKP DPIITVAPPS DHHGISTNSY LNYFSVGGGG GVQALKQSYN FQLHPTSNYN 300 SHQASSLSNP SNMLHPPPLY HYHQHHQFQN PSSFSNFQPN QMMSNSDYFQ QGMMRGAQGQ 360 GSVFRTSTST SSDHDDDDQA IPRAIAKDNN KNKMKNNIET SSSGLGGGSD RQCKVEQFST 420 NQSMFSLSQD TELSTDMNTN EISSSFVSKQ ELGSTNNSSY DQDPSVVPLS DIEDLWDF

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE  60
ADLNKCEPWD LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKI  120
KKQQQQGGKG AGGGCLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLDGKIP PYNNLSKAAR  180
DEWVVCRVFH KNMGLKKTLS PTRMNSFGNI GDHDLLDCSS LPPLMDPTLD TSNVMTNKHS  240
SGHGDNDFKP DPIITVAPPS DHHGISTNSY LNYFSVGGGG GVQALKQSYN FQLHPTSNYN  300
SHQASSLSNP SNMLHPPPLY HYHQHHQFQN PSSFSNFQPN QMMSNSDYFQ QGMMRGAQGQ  360
GSVFRTSTST SSDHDDDDQA IPRAIAKDNN KNKMKNNIET SSSGLGGGSD RQCKVEQFST  420
NQSMFSLSQD TELSTDMNTN EISSSFVSKQ ELGSTNNSSY DQDPSVVPLS DIEDLWDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	134	GGKGAGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-99	NAC family protein