PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017853.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 472aa MW: 50087.8 Da PI: 8.3542

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017853.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6e-12	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+++H++ PCP017853.1 48 DEADCSYYLRTGICGYGSRCRYNHPR 73 6799********************96 PP
2	zf-CCCH	41.6	2.1e-13	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++CkF+H++ PCP017853.1 95 QPVCQYFMRTGTCKFGASCKFHHPK 119 689********************96 PP
3	zf-CCCH	33	1e-10	139	165	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+ ++CkF+H++ PCP017853.1 139 PGERECSYYVKTGQCKFSATCKFHHPQ 165 5789*********************97 PP
4	zf-CCCH	38.9	1.4e-12	300	326	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p PCP017853.1 300 PGQPECQYYMRTGDCKFGSSCRYHHPP 326 5789*********************97 PP
5	zf-CCCH	34.8	2.7e-11	348	371	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC ++++ G Ck+G+ CkF H+ PCP017853.1 348 APLCTHYQQRGACKFGPACKFDHP 371 68*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MERYGRAAEG SQSDPPPEWN FPGPETGPEE SMWPLGLRPG ESYPERPDEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRSTVTG AARPGGLEYP ERAGQPVCQY FMRTGTCKFG ASCKFHHPKQ 120 GGSSGSPVSL NYYGYPLRPG ERECSYYVKT GQCKFSATCK FHHPQPAGIQ LPVPSPAPQV 180 SPVPATHTLY QTVQSPSVSS QQYGVVFARP PLLQGSYVPS PYGQVLLSPG TIPFPGWNPY 240 QTQASQLPSS TQPGVGSGTL YTQLSPSAPA YTGMYQPIPL PSSFGLPTTS QKELSFPERP 300 GQPECQYYMR TGDCKFGSSC RYHHPPEAVQ PKATVVLSSS GLPSRPGAPL CTHYQQRGAC 360 KFGPACKFDH PIGTLSYSSS TSSLADMPVA PYPVGSSIGT LAPSSASSEL RPELSSSSGK 420 ELVSARMSSS LSTSSGSVGS TVSKGGVTPV GVQQSSQGSG PSVGSGNNTE SQ

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MERYGRAAEG SQSDPPPEWN FPGPETGPEE SMWPLGLRPG ESYPERPDEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSTVTG AARPGGLEYP ERAGQPVCQY FMRTGTCKFG ASCKFHHPKQ  120
GGSSGSPVSL NYYGYPLRPG ERECSYYVKT GQCKFSATCK FHHPQPAGIQ LPVPSPAPQV  180
SPVPATHTLY QTVQSPSVSS QQYGVVFARP PLLQGSYVPS PYGQVLLSPG TIPFPGWNPY  240
QTQASQLPSS TQPGVGSGTL YTQLSPSAPA YTGMYQPIPL PSSFGLPTTS QKELSFPERP  300
GQPECQYYMR TGDCKFGSSC RYHHPPEAVQ PKATVVLSSS GLPSRPGAPL CTHYQQRGAC  360
KFGPACKFDH PIGTLSYSSS TSSLADMPVA PYPVGSSIGT LAPSSASSEL RPELSSSSGK  420
ELVSARMSSS LSTSSGSVGS TVSKGGVTPV GVQQSSQGSG PSVGSGNNTE SQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-141	C3H family protein