PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017476.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 817aa    MW: 90408.8 Da    PI: 8.3834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017476.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.2e-11112135326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C +++r+G+Ck+G+ CkF H+
  PCP017476.1 112 QNICTHYSRYGICKFGPACKFDHP 135
                  568********************9 PP

2zf-CCCH36.48.9e-12427449527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C+++++tG Ck+G++CkF+H++
  PCP017476.1 427 DCPYYLKTGNCKFGSNCKFNHPR 449
                  7********************96 PP

3zf-CCCH33.95.2e-11507531226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++rtGtCky  +CkF+H+
  PCP017476.1 507 GEKDCYYYMRTGTCKYETNCKFNHP 531
                  7889********************9 PP

4zf-CCCH31.72.6e-10730755126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++r+G Cky ++C+F+H+
  PCP017476.1 730 PGERECPYHMRNGSCKYASNCRFNHP 755
                  5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    
MIGPATTTIR ISRLLTTKFE LCMLESTPKS KISINPARGG VFQRGSEFSP IDFRLSDIFW  60
FSVEVYLNMG NQELLLTEKL MQESQSNPLY ISGESYAGVY VPTLASQIAK DQNICTHYSR  120
YGICKFGPAC KFDHPLHISS STTSGPDHRL PFSDSATTNG AGMAGSRNGT YVTTQPQPVH  180
SQQKPSNPVT ATVAAASAAA ISIKTMYFSA ARIALPVTVS VLVVMYKYFR SGRKSEMSEG  240
VEVPLNPTSV PSPAPSDLER EILDWIRTLD PDMLNKIRNL DPAILDVIRN FDPAFSSEFS  300
KSVNGPLNPP SVPLPAPSDL DSKFLDWIRK LHPAVLDELL SDPAFLDEIR NFDPSIVNEI  360
RKLSLKGKEE KEEEEKRRES EKKIEKERER ESSGGRGGNE NGGVVDKKVV EESSRRNQYP  420
LRPEAKDCPY YLKTGNCKFG SNCKFNHPRI RKNKQVSKDK AKKREELEKE QDQTESKYYI  480
SPGRHIGVPS VAPALELNFL GLPIRPGEKD CYYYMRTGTC KYETNCKFNH PDPTAAGESR  540
PQSSNGRPAS LQGLPKSQGI NSETTEWNGY QAPAYLPHRS KPAPPPPPYV MNNSVTERQY  600
AQQKQAEEFP QRPGQPVCFY FAQTGDCINK SNCQYHHPKN HTPATPSCTL NDRGLPLRPG  660
QNICTQYSRC GLCSSGPTCR FDHPSLSGAK RALGLGEWDD GNDTRYSHSR EKPSVAPVLE  720
LNFLGLPIRP GERECPYHMR NGSCKYASNC RFNHPDPTAT GGSHPPSGYG NGGPASLQGA  780
SQSTVAPWSA PRPLNEAPVY STLMIPPPHV VSSQNSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-80C3H family protein