PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP017476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 817aa MW: 90408.8 Da PI: 8.3834 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6.2e-11 | 112 | 135 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ PCP017476.1 112 QNICTHYSRYGICKFGPACKFDHP 135 568********************9 PP | |||||||
2 | zf-CCCH | 36.4 | 8.9e-12 | 427 | 449 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++++tG Ck+G++CkF+H++ PCP017476.1 427 DCPYYLKTGNCKFGSNCKFNHPR 449 7********************96 PP | |||||||
3 | zf-CCCH | 33.9 | 5.2e-11 | 507 | 531 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtGtCky +CkF+H+ PCP017476.1 507 GEKDCYYYMRTGTCKYETNCKFNHP 531 7889********************9 PP | |||||||
4 | zf-CCCH | 31.7 | 2.6e-10 | 730 | 755 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ PCP017476.1 730 PGERECPYHMRNGSCKYASNCRFNHP 755 5789*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence |
MIGPATTTIR ISRLLTTKFE LCMLESTPKS KISINPARGG VFQRGSEFSP IDFRLSDIFW 60 FSVEVYLNMG NQELLLTEKL MQESQSNPLY ISGESYAGVY VPTLASQIAK DQNICTHYSR 120 YGICKFGPAC KFDHPLHISS STTSGPDHRL PFSDSATTNG AGMAGSRNGT YVTTQPQPVH 180 SQQKPSNPVT ATVAAASAAA ISIKTMYFSA ARIALPVTVS VLVVMYKYFR SGRKSEMSEG 240 VEVPLNPTSV PSPAPSDLER EILDWIRTLD PDMLNKIRNL DPAILDVIRN FDPAFSSEFS 300 KSVNGPLNPP SVPLPAPSDL DSKFLDWIRK LHPAVLDELL SDPAFLDEIR NFDPSIVNEI 360 RKLSLKGKEE KEEEEKRRES EKKIEKERER ESSGGRGGNE NGGVVDKKVV EESSRRNQYP 420 LRPEAKDCPY YLKTGNCKFG SNCKFNHPRI RKNKQVSKDK AKKREELEKE QDQTESKYYI 480 SPGRHIGVPS VAPALELNFL GLPIRPGEKD CYYYMRTGTC KYETNCKFNH PDPTAAGESR 540 PQSSNGRPAS LQGLPKSQGI NSETTEWNGY QAPAYLPHRS KPAPPPPPYV MNNSVTERQY 600 AQQKQAEEFP QRPGQPVCFY FAQTGDCINK SNCQYHHPKN HTPATPSCTL NDRGLPLRPG 660 QNICTQYSRC GLCSSGPTCR FDHPSLSGAK RALGLGEWDD GNDTRYSHSR EKPSVAPVLE 720 LNFLGLPIRP GERECPYHMR NGSCKYASNC RFNHPDPTAT GGSHPPSGYG NGGPASLQGA 780 SQSTVAPWSA PRPLNEAPVY STLMIPPPHV VSSQNSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 6e-80 | C3H family protein |