PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016961.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 306aa    MW: 33941.7 Da    PI: 4.851
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016961.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.3e-1632122186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s++p+f++l+
  PCP016961.1  32 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGTLTSSWPFFERLD 122
                  7****************************************99999**************************9999888899*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGDLTDLQTT PSNATSTPPS SNPRPMPVRE DCWSEDATST LVDAWGRRYL ELNRGNLRQK  60
DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKVE KARVSSSNGT LTSSWPFFER  120
LDSLIGSNVK KPSPSPLSPS PPVAVPLPLG YRKTPSSAPV VTAVALPQKR SASTAALDEG  180
FFRMNYSAVA AAAAAGAEDD DDEDEDEEDE DNDEVDEEVE VERERESGGE IGGGGGEGLK  240
RLARAIERFG EVYQRVEAEK LRQMVELEKQ RIQFANELEV ERMRMIMDTQ VQLERIKHGK  300
RSGSNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-51Trihelix family protein