PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016938.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 280aa    MW: 31437 Da    PI: 6.7695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016938.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.8e-20202235134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  PCP016938.1 202 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 235
                  *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MDGSLPTDGA FNYESVLSND ILSALDFPME DIDDSVEDND WDTKFQDIEP PPNIDQLLGS  60
GIFSYDDKKK HTNLSTPYEQ MYQPQFPSVT CETIRSKGSL RNDDHESIGS CAAQFEPKFE  120
KRTRSKLSRS RRANPVIFST QFIPSTSSNS SATENLYHWD ACKFDIESSR TEDMLNTTKR  180
KQKKTGKLTT DEPGESREAK KCTHCQVTKT PQWREGPLGP KTLCNACGVR YRSGRLFPEY  240
RPAASPTFVA AVHSNSHKKV IELRSKGCQE AVMGILSSAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-38GATA family protein