PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016473.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 267aa MW: 29789.6 Da PI: 6.4306

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016473.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.3	3e-55	86	189	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi PCP016473.1 86 QLQTFWANQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 183 89****998999******************************************************************************** PP NF-YC 96 vprdel 101 vpr++l PCP016473.1 184 VPREDL 189 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MDPHGHNQPQ SMGMVGSGAQ LTYGSNPYQH NQMVGSPNPG SVSATVGAMQ SASQSPGAQL 60 AQHQLAQHQL AYQHIHQQQQ QQLQQQLQTF WANQYQEIDK VTDFKNHSLP LARIKKIMKA 120 DEDVRMISAE APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPREDLK DEVLGSIPRG TVSVGGPADA LPYCYMPPQH APQVGAPGMM MGKPMMDPSM 240 YAQQSNPYMS QPMWQQAPDQ QQSPSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	165	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-78	NF-YC family protein