PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016372.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 296aa    MW: 32693.8 Da    PI: 8.4894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016372.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-084263426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 + C++f++ G+C+ Gd+C FaHg
  PCP016372.1 42 AACPDFRK-GHCPKGDSCEFAHG 63
                 78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MFEFKVRRCA RGRSHDWTDC PYAHPGEKAR RRDPRKYHYS GAACPDFRKG HCPKGDSCEF  60
AHGVFECWLH PARYRTQPCK DGLGCNRRVC FFAHTPEQLR VLPGQSPRTQ GSGAFDSYPF  120
GSPPTSILMS PPLSPPSESP PMSPNSPQVG HNSVSELVAS MRNFKLAKMK MNSPPAWGAQ  180
MGSGFGPSPR GSAFRSGFCS LPSTPSRTTG RVGPNPVDLW DQPCEEEPAM ERVESGRDLR  240
ARMYARMYER LSKENSFGRV ACVDSGSSAP DVGWISELVS ECGKNGWPDD SSDLLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-94C3H family protein