PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP016288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 28447.4 Da PI: 8.1544 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 140 | 174 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ PCP016288.1 140 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 174 ********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MVGGPCSCGV LHHTQSNSSF SMLFSMPNHH KPYDHIHHET SYDHHHMYPF ASPSSSVDCT 60 LSLGTPSTRL TDNDVVSHDR RARNGERRSG NCVSNFCWDL LQPNKSSPSS HHKNGSRVGN 120 INGVTNAVSS NNDPLLARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRATAAT 180 ANGGGSSVVG MESNGYHHHN SWIPHSQTQK MACFGNEFRF IEDDTVHHEN DMNGIPFLSW 240 RLNVTDRPSL VHDFTR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 3e-60 | GATA family protein |