PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016225.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 482aa    MW: 53975.9 Da    PI: 5.9736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016225.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.93.2e-921414601339
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL+ecA a+s ++l +a+++L +l ++asp+g +  +Rl+ayf++A+a+r+ +s+ ++++ l   ++       +  a+++f+ +sP++kf+h+t
  PCP016225.1 141 LITLLFECAVAISIDNLPEAHRMLLELTQMASPYGpSCAERLVAYFVKAMASRVINSWLGISSPLVNYKS-------VHGAFQVFNTISPFIKFAHFT 231
                  5789*******************************9999**********************987765554.......468999*************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea+++++rvHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g     s+e l etg++L++fA++lg++fef + +++++ +++ ++ +
  PCP016225.1 232 SNQAILEAFHHHDRVHILDLDIMQGLQWPALFHILATRMEGPPHVRMTGMGT----SSEILLETGKQLSSFARRLGLSFEFLP-IVRKVGEVDASMVQ 324
                  ****************************************************....99*************************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v++gE+laV++    h+l+d +++  +     ++++ +l P+++++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+ + +r+kvE+ l+ re
  PCP016225.1 325 VQRGETLAVHWLQ--HSLYDVTGPDWK----AMSFIEELAPRIITLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPS-DPNRHKVEHCLFYRE 414
                  ************9..999988888888....**********************.899**********************965.689************ PP

         GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqakl 339
                  i n++a  g +r  +  ++++Wr  l++ + F +v +s + ++qa  
  PCP016225.1 415 INNILAIGGPARSGED-KFRQWRGELGArSEFMQVGMSGNSMAQAXX 460
                  ***********77665.5******998659**************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    
MADGTVNMIQ SHQPWINYPN PNVNGFQNNP NSDPKPVENR FVNLERSELS LWVEHITKQL  60
IDDLPEPATA ANTAANDRLQ TSEDYFVPSS LSTDLNSPRK VPQRSYSEHE LHEVQLLADN  120
NNVQARGGND MSKLEEHGLT LITLLFECAV AISIDNLPEA HRMLLELTQM ASPYGPSCAE  180
RLVAYFVKAM ASRVINSWLG ISSPLVNYKS VHGAFQVFNT ISPFIKFAHF TSNQAILEAF  240
HHHDRVHILD LDIMQGLQWP ALFHILATRM EGPPHVRMTG MGTSSEILLE TGKQLSSFAR  300
RLGLSFEFLP IVRKVGEVDA SMVQVQRGET LAVHWLQHSL YDVTGPDWKA MSFIEELAPR  360
IITLVEQDMS HSGSFLDRFV GSLHYYSTMF DSLESYLPSD PNRHKVEHCL FYREINNILA  420
IGGPARSGED KFRQWRGELG ARSEFMQVGM SGNSMAQAXX XXXXXXXGSG GVSLGPEVSS  480
CK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-120GRAS family protein