PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015974.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRF

Protein Properties

Length: 391aa MW: 43803.6 Da PI: 9.3442

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015974.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.9	5e-25	80	124	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e PCP015974.1 80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 124 79****************************************985 PP
2	QLQ	55	2.4e-19	15	48	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTa+Q+q+L++Q+l++Ky+ +++P+P +L+ + PCP015974.1 15 PFTATQWQELEHQALIFKYMTSGVPIPNDLVYPF 48 9*****************************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MMSGNPSSAA RNRYPFTATQ WQELEHQALI FKYMTSGVPI PNDLVYPFKR RLDSSVSSRL 60 FPHHPMGWGC YEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK 120 PVEVSSSSAL SSPTAASTAT AEHLSSPSAT SPSSSSLHRN LCKTSSSSYT LTPLSSSIST 180 QQTHQSNSSL YPFLNYPYSS SSSSSAPQLF LNSASYSDKD YRYLQGAKEG VDELAFFPDS 240 SADERNLLMN SYRGYSPTQQ SQEDQQQHCF VWGTDFKSVK TEKESAAAAA ESQKSLHHFF 300 GEWQEPTKSS GDTWLDLASN SGGPNGKFDL LSGPNTSHYS SLRFFNLKQL SLLVVQMVNN 360 KVFHLWRLNF EGQRSTCRRW VIGLFLNSAG G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MMSGNPSSAA RNRYPFTATQ WQELEHQALI FKYMTSGVPI PNDLVYPFKR RLDSSVSSRL  60
FPHHPMGWGC YEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  120
PVEVSSSSAL SSPTAASTAT AEHLSSPSAT SPSSSSLHRN LCKTSSSSYT LTPLSSSIST  180
QQTHQSNSSL YPFLNYPYSS SSSSSAPQLF LNSASYSDKD YRYLQGAKEG VDELAFFPDS  240
SADERNLLMN SYRGYSPTQQ SQEDQQQHCF VWGTDFKSVK TEKESAAAAA ESQKSLHHFF  300
GEWQEPTKSS GDTWLDLASN SGGPNGKFDL LSGPNTSHYS SLRFFNLKQL SLLVVQMVNN  360
KVFHLWRLNF EGQRSTCRRW VIGLFLNSAG G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-59	GRF family protein