PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015714.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 2207aa MW: 245652 Da PI: 7.7683

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015714.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	1397	1419	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H PCP015714.1 1397 CPvkGCGKKFFSHKYLVQHRRVH 1419 9999*****************99 PP
2	zf-CCCH	29.9	9.7e-10	1513	1537	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG++C+++H++ PCP015714.1 1513 QTECKYYLRSGGCKYGENCRYSHSR 1537 568********************95 PP
3	zf-CCCH	32.4	1.6e-10	1557	1582	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ PCP015714.1 1557 PGERECPYYMRNGSCKYASNCRFNHP 1582 5789*********************9 PP
4	zf-CCCH	31.1	4.1e-10	2064	2088	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG++Ck++H++ PCP015714.1 2064 QTECKYYLRSGGCKYGEKCKYSHSK 2088 568********************95 PP
5	zf-CCCH	27.7	4.6e-09	2103	2127	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++Cr++ r+G Cky ++C+F+H+ PCP015714.1 2103 GKRECRYYIRNGSCKYASNCRFNHP 2127 789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 2207 aa Download sequence
MAASSGLIAE ANPEVFPWLK TLPVAPEYHP TWAEFQDPIA YIFKIEKEAS QYGICKIVPP 60 VPPSTKKTTI GNLNRSLAAR AGVSGSSCPK SEPTFTTREQ QIGFCPRRPR PVHRPVWQSG 120 EQYTFQEFEV KAKSFEKSYL RKCSKKGGLS PLEIETLYWK ATVDKPFSVE YANDMPGSAF 180 MPLGARKSCS TSRDAGDNVT LGETAWNMRG VSRSKGSLLR FMKEEIPGVT SPMVYIAMLF 240 SWFAWHVEDH DLHSLNYLHM GAGKTWYGVP KDAAVAFEEV VRVQGYAGEI NPLVLRVSDA 300 PFAFLFTNLQ IYLPSVTFST LGEKTTVMSP EVFVSSGIPC CRLVQNAGEF VVTFPRAYHT 360 GFSHGFNCAE AANIATPEWL RVAKDAAIRR ASINYPPMVS HFQLLYDLAL ALCSRMPSRI 420 SSEPRSSRLK DKRKCEGDIV VKELFVQDVI QNNDLLNVLG KGSPIVLLPQ SSSDLSVCSK 480 LRVGSQSRVN PGFSQGSQSL REEMKSSGSV SDGLMIDRQQ VKGFYSVRGK LASPSESNTL 540 ASLSGSNNVR GLNSKRSNLN CERESNVEGE GLSDQRLFSC VTCGILSFAC VAIIQPTEEA 600 ARYLMSADCS FFNDWVVGSG LASEVFPVAT GDPITSKNAP CTGLEEYNAP AGLYDVLVQS 660 GDCQIQVVDQ GNEVVSNTEM PRETSALGLV ALNYGNSSDS EEDQVEPDVP VCSDEPNMTN 720 CSLESRYRDQ SASPPWRNPY AGTSGAHSPS SQGSGCENEL HLQTFDHYAT DGRKIANFKD 780 SSLQNFDCSA DFKTNNSAST ATGFGKAIVP IQKKSMSFHP GCDEDSSRMH VFCLEHAVEV 840 EQQLRSIGGV HILLLCHPDY PRIEDEAKSM AEELGISYLW NDMAFMNAAK EDETRIQLAL 900 DSEEAIAGNG DWAVKLGINL FYSASLSRSH LYSKQMPYNS VTYKAFGRSS PASSPTRIDA 960 YGRRGGKPKK VVAGKWCGKV WMSNQVHSFL VKRDPEEEVE VAEDEEERTF CAWAMPDEDH 1020 EVKSEITRKT EKTVKKYARK RKMTADTRTT KKARCFDKED AVSDYSVDDN SLQQQRRLPK 1080 SKQAKHTESG RTKKPKHVET EDAVSDDSMQ DDDSLQQNGR FLHSEQVKYI ERSDVSDDSM 1140 GVESHQQHKR TAKSKQFKPV ETDVVSDDSF EGSSHQPQRV LRSKTTKCTG RENLISEDVH 1200 GFGSHQQRRS ISRSKQARAR FIEREDTALD ETPEDNFQQH KRILQNKQTK PETRGKMRQE 1260 TPRQVKQGTA PLVKQGTRTP RNQQTPQQTK KQTPRLRNNQ SEQNSFDLYA EEETEGGPST 1320 RLRKRAPKPS KVPGTKPKEQ QQTARKKAKN ASAGKAQGGR NETKLKEEDA EFVCDFEGCT 1380 MSFASRHDLS LHKRNICPVK GCGKKFFSHK YLVQHRRVHT DDRPLRCPWK GCKMTFKWAW 1440 ARTEHIRVHT GARPYVCAEP GCAQTFRFVS DFSRHKRKTG HSVKKREKGR ARVSPVPKER 1500 VKDKDESAEN PSQTECKYYL RSGGCKYGEN CRYSHSREKP SVAPVLELNF LGLPIRPGER 1560 ECPYYMRNGS CKYASNCRFN HPDPTTTGGS NRPSGYGNGG PASLQGASQS TVAPWSAPRP 1620 LNEAPVYSTL MIPPPQVVSS QNSEWNGYQD PAYVPERSMP ARPPYMMNKQ KFSEGVEVPL 1680 NPTSGPSPAT SDLDHEILDW IRTLDPAVLN RIRNPDPALL HEIHQFNPAV EIRNFDPSIV 1740 DRIRNLDPAF PSDFSESVDV PQNPPSVPSP EPSVVEILDW IGTLGPAVLD EIQQFDPAFL 1800 DEDRSFDPSI VDGIPKLSLK KKEEKAEEEE KERETEREKE NERERESEKS ESSSGGGGGN 1860 ENGGEVEEEV VEESSRRDQY PLRLGDCRYH LRTGNCSPPL PDPSQGAVLR SISSSSFFLE 1920 FPQFSTRRLG FGDVRRAARF GCWVLHGDGE GEGWVRQTFS RFPDGRRRGG RNPSEGGGNP 1980 SGENKKLMLT SSRPGIGSAD FCWAACWPPP EPSGFFGMDR VFGEGGEKMG CCPAKRGRAG 2040 VALSICVPKE SVKDKDESAQ NPSQTECKYY LRSGGCKYGE KCKYSHSKVK LELNFLGLPI 2100 RPGKRECRYY IRNGSCKYAS NCRFNHPDPT DTGESDPSSG YGNGGPAFLQ GASQSTVAPW 2160 SAPRPLNEDP VYSTLMIPPP QVVSSQNSEW NGYQVLLFNF PISESRV

Sequence ? help Back to Top

Protein Sequence Length: 2207 aa Download sequence

MAASSGLIAE ANPEVFPWLK TLPVAPEYHP TWAEFQDPIA YIFKIEKEAS QYGICKIVPP  60
VPPSTKKTTI GNLNRSLAAR AGVSGSSCPK SEPTFTTREQ QIGFCPRRPR PVHRPVWQSG  120
EQYTFQEFEV KAKSFEKSYL RKCSKKGGLS PLEIETLYWK ATVDKPFSVE YANDMPGSAF  180
MPLGARKSCS TSRDAGDNVT LGETAWNMRG VSRSKGSLLR FMKEEIPGVT SPMVYIAMLF  240
SWFAWHVEDH DLHSLNYLHM GAGKTWYGVP KDAAVAFEEV VRVQGYAGEI NPLVLRVSDA  300
PFAFLFTNLQ IYLPSVTFST LGEKTTVMSP EVFVSSGIPC CRLVQNAGEF VVTFPRAYHT  360
GFSHGFNCAE AANIATPEWL RVAKDAAIRR ASINYPPMVS HFQLLYDLAL ALCSRMPSRI  420
SSEPRSSRLK DKRKCEGDIV VKELFVQDVI QNNDLLNVLG KGSPIVLLPQ SSSDLSVCSK  480
LRVGSQSRVN PGFSQGSQSL REEMKSSGSV SDGLMIDRQQ VKGFYSVRGK LASPSESNTL  540
ASLSGSNNVR GLNSKRSNLN CERESNVEGE GLSDQRLFSC VTCGILSFAC VAIIQPTEEA  600
ARYLMSADCS FFNDWVVGSG LASEVFPVAT GDPITSKNAP CTGLEEYNAP AGLYDVLVQS  660
GDCQIQVVDQ GNEVVSNTEM PRETSALGLV ALNYGNSSDS EEDQVEPDVP VCSDEPNMTN  720
CSLESRYRDQ SASPPWRNPY AGTSGAHSPS SQGSGCENEL HLQTFDHYAT DGRKIANFKD  780
SSLQNFDCSA DFKTNNSAST ATGFGKAIVP IQKKSMSFHP GCDEDSSRMH VFCLEHAVEV  840
EQQLRSIGGV HILLLCHPDY PRIEDEAKSM AEELGISYLW NDMAFMNAAK EDETRIQLAL  900
DSEEAIAGNG DWAVKLGINL FYSASLSRSH LYSKQMPYNS VTYKAFGRSS PASSPTRIDA  960
YGRRGGKPKK VVAGKWCGKV WMSNQVHSFL VKRDPEEEVE VAEDEEERTF CAWAMPDEDH  1020
EVKSEITRKT EKTVKKYARK RKMTADTRTT KKARCFDKED AVSDYSVDDN SLQQQRRLPK  1080
SKQAKHTESG RTKKPKHVET EDAVSDDSMQ DDDSLQQNGR FLHSEQVKYI ERSDVSDDSM  1140
GVESHQQHKR TAKSKQFKPV ETDVVSDDSF EGSSHQPQRV LRSKTTKCTG RENLISEDVH  1200
GFGSHQQRRS ISRSKQARAR FIEREDTALD ETPEDNFQQH KRILQNKQTK PETRGKMRQE  1260
TPRQVKQGTA PLVKQGTRTP RNQQTPQQTK KQTPRLRNNQ SEQNSFDLYA EEETEGGPST  1320
RLRKRAPKPS KVPGTKPKEQ QQTARKKAKN ASAGKAQGGR NETKLKEEDA EFVCDFEGCT  1380
MSFASRHDLS LHKRNICPVK GCGKKFFSHK YLVQHRRVHT DDRPLRCPWK GCKMTFKWAW  1440
ARTEHIRVHT GARPYVCAEP GCAQTFRFVS DFSRHKRKTG HSVKKREKGR ARVSPVPKER  1500
VKDKDESAEN PSQTECKYYL RSGGCKYGEN CRYSHSREKP SVAPVLELNF LGLPIRPGER  1560
ECPYYMRNGS CKYASNCRFN HPDPTTTGGS NRPSGYGNGG PASLQGASQS TVAPWSAPRP  1620
LNEAPVYSTL MIPPPQVVSS QNSEWNGYQD PAYVPERSMP ARPPYMMNKQ KFSEGVEVPL  1680
NPTSGPSPAT SDLDHEILDW IRTLDPAVLN RIRNPDPALL HEIHQFNPAV EIRNFDPSIV  1740
DRIRNLDPAF PSDFSESVDV PQNPPSVPSP EPSVVEILDW IGTLGPAVLD EIQQFDPAFL  1800
DEDRSFDPSI VDGIPKLSLK KKEEKAEEEE KERETEREKE NERERESEKS ESSSGGGGGN  1860
ENGGEVEEEV VEESSRRDQY PLRLGDCRYH LRTGNCSPPL PDPSQGAVLR SISSSSFFLE  1920
FPQFSTRRLG FGDVRRAARF GCWVLHGDGE GEGWVRQTFS RFPDGRRRGG RNPSEGGGNP  1980
SGENKKLMLT SSRPGIGSAD FCWAACWPPP EPSGFFGMDR VFGEGGEKMG CCPAKRGRAG  2040
VALSICVPKE SVKDKDESAQ NPSQTECKYY LRSGGCKYGE KCKYSHSKVK LELNFLGLPI  2100
RPGKRECRYY IRNGSCKYAS NCRFNHPDPT DTGESDPSSG YGNGGPAFLQ GASQSTVAPW  2160
SAPRPLNEDP VYSTLMIPPP QVVSSQNSEW NGYQVLLFNF PISESRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein