PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015168.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 665aa MW: 73376.5 Da PI: 6.7107

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015168.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.8e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ PCP015168.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF--RAENGD 216 89**************************986445444..8999*****************************************..348888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ PCP015168.1 217 LCVGIRRA 224 9**996 PP
2	Auxin_resp	112.8	3.3e-37	284	367	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pr st+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gtv++++ +dp+ Wp+S+Wr+L+ PCP015168.1 284 AATHAANGQPFEVVYYPRESTPEFCVKASAVRDAMQIRWCSGMRFKMPFETEDSSRISWfMGTVSSIQVADPICWPESPWRLLQ 367 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQMPPINS KVFYFPQGHA EYTHGKVDFG 60 NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVRESGF DLEDDGFVGN NGTVENPEKP 120 TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EIWKFRHIYR 180 GTPRRHLLTT GWSNFVNQKK LVAGDSIVFF RAENGDLCVG IRRAKRGIGG GPEYPSGWNT 240 TAGNSGSEYG GYSGFSRENG NKVFEKGSSD DAKGKMRAEY VIEAATHAAN GQPFEVVYYP 300 RESTPEFCVK ASAVRDAMQI RWCSGMRFKM PFETEDSSRI SWFMGTVSSI QVADPICWPE 360 SPWRLLQVSW DEPDLLQNVK RVSPWLVELV PSIPSIHPSP FSPPRKKLRL QHNPDYSLVG 420 QLSVPSVCSN FLNSSNPLCN VSDNQSAGIQ GARQAQFGLS SSELFFNKLQ SGLFPIGFQQ 480 LGHFAPLETI GGSFMRKAES NDDISCCPTQ SLKDNDEIKT PHIVLFGQLI VTGQHISKSS 540 SGDDSDGHPK KTTNCSDGSG STSHRHGSVE NCSDGGSPWK TDDSDLSLET GYCKVCIDSG 600 DVGTLDLSVL RSYQELYGKL AGMFGKESSK MLRNVLYRDA SGVVKHTGDE PFGDFLKTAK 660 RLYMA

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQMPPINS KVFYFPQGHA EYTHGKVDFG  60
NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVRESGF DLEDDGFVGN NGTVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFF RAENGDLCVG IRRAKRGIGG GPEYPSGWNT  240
TAGNSGSEYG GYSGFSRENG NKVFEKGSSD DAKGKMRAEY VIEAATHAAN GQPFEVVYYP  300
RESTPEFCVK ASAVRDAMQI RWCSGMRFKM PFETEDSSRI SWFMGTVSSI QVADPICWPE  360
SPWRLLQVSW DEPDLLQNVK RVSPWLVELV PSIPSIHPSP FSPPRKKLRL QHNPDYSLVG  420
QLSVPSVCSN FLNSSNPLCN VSDNQSAGIQ GARQAQFGLS SSELFFNKLQ SGLFPIGFQQ  480
LGHFAPLETI GGSFMRKAES NDDISCCPTQ SLKDNDEIKT PHIVLFGQLI VTGQHISKSS  540
SGDDSDGHPK KTTNCSDGSG STSHRHGSVE NCSDGGSPWK TDDSDLSLET GYCKVCIDSG  600
DVGTLDLSVL RSYQELYGKL AGMFGKESSK MLRNVLYRDA SGVVKHTGDE PFGDFLKTAK  660
RLYMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein