PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP014843.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 302aa    MW: 31982 Da    PI: 9.5736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP014843.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08106131227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     Ck+Gd+C+FaHg+
  PCP014843.1 106 KTRLCNKYNTVEGCKFGDKCHFAHGE 131
                  8*********99************96 PP
2zf-CCCH36.49.1e-12269294127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +f + GtC +GdrC+FaHg+
  PCP014843.1 269 FKTKLCENFTK-GTCTFGDRCHFAHGQ 294
                  69*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MEFGGGGRKR GRPEAGHFNG NGGFKKSKPE MESFQPGIGS KSKPCTKFFS TSGCPFGEGC  60
HFLHYVPGGI KAVSQMTGSN PTHPPPPRNS AAPPSFPDGS SPPTVKTRLC NKYNTVEGCK  120
FGDKCHFAHG EWELGRPTAQ SYEDPRAGGG FPGRMGGRME PPPPAHGAVA SFGATATAKI  180
SVDASLAGAI IGKNGVHSKQ ICRVTGAKLS IREHETDHKL RNIELEGTLD QIKDASAMVR  240
ELIGNVSSGA GAHNMRNPAI SASSPASNFK TKLCENFTKG TCTFGDRCHF AHGQEELRRS  300
AM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-54C3H family protein