PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP014783.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 747aa    MW: 81199.5 Da    PI: 5.5274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP014783.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2081136156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PCP014783.1  81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136
                  688999***********************************************999 PP
2START220.65e-692714921206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+++ep+W++s     + +n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tlev+
  PCP014783.1 271 ELAVAAMEELVRMAQVGEPLWMTSLdgsaTVLNEDEYIRTFPRGVGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLEVL 367
                  57899********************999999**********9976699999***************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ +++p       +++ pSg+li++++ng+skvtwveh+++++r 
  PCP014783.1 368 STGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPNPA---PRSCQRMPSGCLIQEMPNGYSKVTWVEHAEVDERG 462
                  ***********************************************************4...455789***************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+gak+wvatl+rqce+
  PCP014783.1 463 VHNLYKQLVSSGHAFGAKRWVATLDRQCER 492
                  ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MPSMIGSNGN INGFASSSGL TLGQPNMMEA GHLHPLDMAT NTSESDIARF RDDDFDSATK  60
SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE  120
PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG  180
EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPLGNYPL MSSPVPSRGP LDLGVGSFGG  240
QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQVGEPL WMTSLDGSAT  300
VLNEDEYIRT FPRGVGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR  360
ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
NLRPNPAPRS CQRMPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK  480
RWVATLDRQC ERLASAMASN IPTGDVGVIT NQEGRRSMLK LAERMVISFC AGVSASTTHT  540
WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD  600
ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESSSDPT ASFVIYAPVD  660
IVSMNVVLNG SDPDYVALLP SGFAILPDGA GIGDSGSGGG SLLTVAFQIL VDSVPTAKLS  720
LGSVATVNNL IACTVERIKA ALSCDNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein