PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP014697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27456.5 Da PI: 4.9297 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.6e-20 | 37 | 88 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k PCP014697.1 37 RRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 88 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.4 | 9.6e-39 | 36 | 126 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd l+++ e+L++e+++L +l++ PCP014697.1 36 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQMERDLRSLREDYDMLASRFESLKEEKQSLLMQLQK 126 69************************************************************************************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MERRKEECYE EENLDYVSGL EPQFATKRKK NKGTNTRRFS DEQISLLESI FEADSKLEPR 60 RKVQLARELG LQPRQVAIWF QNRRARWKSK QMERDLRSLR EDYDMLASRF ESLKEEKQSL 120 LMQLQKLNDL VGTSRDGAPT EDSLVNQTVD GSSYKEGNCE TTAQVRLEEE LEQRGVIDSH 180 TSNDFGGEYG DERHDELPKI GPLDASATPQ ELHRLDSGSI LFDPSRCNLH WLNFWA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 27 | 38 | KRKKNKGTNTRR |
2 | 83 | 91 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-40 | HD-ZIP family protein |