PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP014682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 709aa MW: 77011 Da PI: 6.6459 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 307 | 327 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PCP014682.1 307 PCPDFRK-GACRRGDMCEYAHG 327 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence |
MCNGSDQIKP KSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS 60 IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVVKLILSL SDADVNQACG 120 RDRSTALHCA ASGGAENAVD CVKLLLEAGA DPNSLDANGH RPIDVIVVPP RLQNVKLAIE 180 ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYSSLSSASE 240 KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTTCA RRVCFFAHTT 360 EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN 420 GMSHSSLGWP QPNVPALHLP EFDMQQQQLQ QQQLLNELSC LSQPSLSNNS LNRSGRRTTL 480 TPSNLDDIFS AESLSPRYSD QSLQSGVFSP THKSAVLNQF QQQQSILSPI HTNFSPKTVD 540 HALLQASYGG PSSGRMSPRN VEPISPMGSR VSMLAQREKQ QQFRSLSSRE LGSSSASIVG 600 SSPNSWSKWG SSNGKPDWAV STDELGKLRR SSSFELGNNG EEPDLSWVQS LVKESPTDIK 660 EKQTPSSAVT ATGSSNNGPS ANSQREAVDH AVLGAWIDQM HLDLVAQQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |