PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014552.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27792.4 Da PI: 9.6187

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014552.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.2	4.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t k++ey+s PCP014552.1 9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTSKMHEYIS 59 569**********************************************86 PP
2	K-box	85.6	9.9e-29	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqk+ g++l+ +++es++ l kLk+ +++L+re+R++lG dL+ Ls+ +L++Le+++++sl iR++K++++++q+e+++kk k+l+e+ ++ PCP014552.1 71 YQKTMGVDLWRTHYESMKDTLWKLKEINNKLRREIRQRLGHDLNGLSYDDLRSLEDKMQSSLDAIRERKYHVIKTQTETTKKKVKNLEERRGNM 164 7899999*********************************************************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TSKMHEYISP 60 TTTTKRMYDD YQKTMGVDLW RTHYESMKDT LWKLKEINNK LRREIRQRLG HDLNGLSYDD 120 LRSLEDKMQS SLDAIRERKY HVIKTQTETT KKKVKNLEER RGNMLHGYEA ASENPQYCYV 180 DNEEDYESAL ALANGANNLY TFQLHRNSDQ LHHPNLHHHR GSSLGSSITH LHDLRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-65	MIKC_MADS family protein