PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014109.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-PHD

Protein Properties

Length: 704aa MW: 78883 Da PI: 9.5259

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014109.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32	2.1e-10	475	519	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F +n ps++ + L+k+lgL+ ++V+ WF+N R+ PCP014109.1 475 RKAVEKLRQVFSENELPSRAVKDNLSKELGLNPEKVSKWFKNARY 519 567899*************************************97 PP
2	PHD	35.8	1.8e-12	233	288	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+ +fH+kCl+++l++e++p+g w+C+ C++k PCP014109.1 233 FCAKCKLNEAfpDNDIILCDgTCNCAFHQKCLDPPLDTENIPRGeqGWFCKFCDCK 288 699999955455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MDTLVKNMRG SGKKSNLKES GKSGYSSSVA KLISSPSFKK GGKVPRVKKL KPKSSKTIIA 60 SALSKKRGAD SSSKASTSRN NDTNKKLMSR KEFHKVHDTD SSKKPSSVKL QDHKLSDNGS 120 DEKGEKRRRK KKPKKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYAGE GWKGQSREKI 180 RPELELQRAN KQILNCKLGI RDAIQQLDSL SSVGSIADSF IAPDGSVSHE HIFCAKCKLN 240 EAFPDNDIIL CDGTCNCAFH QKCLDPPLDT ENIPRGEQGW FCKFCDCKME ILELVNAHLG 300 TCFPMNSGWQ DVFKEEATFP VGENSLLNPD EEWPSDDSED DDYKPERNVN SCSISRGGSD 360 DNVSEEELST DDVSVGSDES TDGEIVSGRR QRRSVDYKKL YDEMFGKDGP LLEQISDDED 420 WGPVKRKRRE KESDAASTLM TLYESERNPD IDHTEVKNIR SSDTQVRRSC FRIPRKAVEK 480 LRQVFSENEL PSRAVKDNLS KELGLNPEKV SKWFKNARYL ALKTRKEVSG KDHQAFTPGI 540 SKEPGYENVT GKAADLMASD SDDDTLAETV VHSPKNVNAA FRRKHPKSLS SPLRKSQQKA 600 PSCGSPSKSN KDGKESSDDV SLKKLMNTRT KEKRANLIAG GGGDGCRAAE LEMERLCKAK 660 GRLEHMRQKL LKLQNVKAKQ KSNKSLLHEH TVIYVPVAQL QEKV

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MDTLVKNMRG SGKKSNLKES GKSGYSSSVA KLISSPSFKK GGKVPRVKKL KPKSSKTIIA  60
SALSKKRGAD SSSKASTSRN NDTNKKLMSR KEFHKVHDTD SSKKPSSVKL QDHKLSDNGS  120
DEKGEKRRRK KKPKKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYAGE GWKGQSREKI  180
RPELELQRAN KQILNCKLGI RDAIQQLDSL SSVGSIADSF IAPDGSVSHE HIFCAKCKLN  240
EAFPDNDIIL CDGTCNCAFH QKCLDPPLDT ENIPRGEQGW FCKFCDCKME ILELVNAHLG  300
TCFPMNSGWQ DVFKEEATFP VGENSLLNPD EEWPSDDSED DDYKPERNVN SCSISRGGSD  360
DNVSEEELST DDVSVGSDES TDGEIVSGRR QRRSVDYKKL YDEMFGKDGP LLEQISDDED  420
WGPVKRKRRE KESDAASTLM TLYESERNPD IDHTEVKNIR SSDTQVRRSC FRIPRKAVEK  480
LRQVFSENEL PSRAVKDNLS KELGLNPEKV SKWFKNARYL ALKTRKEVSG KDHQAFTPGI  540
SKEPGYENVT GKAADLMASD SDDDTLAETV VHSPKNVNAA FRRKHPKSLS SPLRKSQQKA  600
PSCGSPSKSN KDGKESSDDV SLKKLMNTRT KEKRANLIAG GGGDGCRAAE LEMERLCKAK  660
GRLEHMRQKL LKLQNVKAKQ KSNKSLLHEH TVIYVPVAQL QEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	EKRRRKKKP
2	126	132	KRRRKKK
3	127	133	RRRKKKP
4	127	135	RRRKKKPKK
5	128	158	RRKKKPKKDKVELDETSRLQRRTRYLLIKIK
6	128	134	RRRKKKP
7	129	136	RKKKPKKD
8	129	159	RRKKKPKKDKVELDETSRLQRRTRYLLIKIK
9	426	431	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-157	HB-PHD family protein