PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014014.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 431aa MW: 48131.1 Da PI: 4.9839

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	1.9e-08	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC+ C + H+ H++v PCP014014.1 16 ARACDSCLVKRARWFCAADDAFLCQRCDASVHSAnqlasrHERV 59 678*****************************667888888876 PP
2	CCT	68	2.6e-23	362	405	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PCP014014.1 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MITDKKAANA MGGNTARACD SCLVKRARWF CAADDAFLCQ RCDASVHSAN QLASRHERVR 60 LQGSSFKANE PMQLTADQAT PAWHRGFKRK ARTPRHNKKP GFAIKEEQEK VGLHPPLPFV 120 PEIGCEEANL MEDEENEDLE QLLYRVPIYD PFAAKLCNIS STDQVENNTD AINLDDEEIE 180 IRNMGDNHEG VQDDLDKLGG FLPTDMELAE FAADVENLLG GGLDEDCSDI KGVLGLLDDG 240 KEVKVEEEVE GMEFNPSILD WNLDYDKSSA VPVQMGSEDK EEEEKLVLLT GVKRKKICLR 300 LDYETVITAW ASQGSPWTNG TRPELNPDDG WLDCMGMWPT GIPQPHGDTA GCVSGRGDDR 360 GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTTSGFG GVGSSSSNAP 420 AAAFPYLMIN K

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MITDKKAANA MGGNTARACD SCLVKRARWF CAADDAFLCQ RCDASVHSAN QLASRHERVR  60
LQGSSFKANE PMQLTADQAT PAWHRGFKRK ARTPRHNKKP GFAIKEEQEK VGLHPPLPFV  120
PEIGCEEANL MEDEENEDLE QLLYRVPIYD PFAAKLCNIS STDQVENNTD AINLDDEEIE  180
IRNMGDNHEG VQDDLDKLGG FLPTDMELAE FAADVENLLG GGLDEDCSDI KGVLGLLDDG  240
KEVKVEEEVE GMEFNPSILD WNLDYDKSSA VPVQMGSEDK EEEEKLVLLT GVKRKKICLR  300
LDYETVITAW ASQGSPWTNG TRPELNPDDG WLDCMGMWPT GIPQPHGDTA GCVSGRGDDR  360
GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTTSGFG GVGSSSSNAP  420
AAAFPYLMIN K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	389	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	1e-79	CO-like family protein