PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013785.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 1324aa MW: 146384 Da PI: 8.3794

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013785.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.2	1.2e-13	4	91	20	97
DUF260 20 pyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++ p++q++++ v+k+FG++ + ++++ ++e++r ++++sl++eA r+ +Pv+Ga+g++l+++++++q++ e++l+ PCP013785.1 4 QCLqwmedPQAQAHATVLVAKFFGRAGLFSFINGVSESQRpgflgLALFQSLLFEAVGRTINPVNGATGLLLSGKWDVCQAAIETVLR 91 45555555999***************************8888889********************************9998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1324 aa Download sequence
MLRQCLQWME DPQAQAHATV LVAKFFGRAG LFSFINGVSE SQRPGFLGLA LFQSLLFEAV 60 GRTINPVNGA TGLLLSGKWD VCQAAIETVL RGGALEPLPE YSRDNHYVRE HQVRVEQRQS 120 TKKKRPYFAV DDDVANFQPP DLNLCLTSAA GLTSRRKRRD WCKSAAEAWT NLEERFASVS 180 RTGVNHLKTE LHTVQKGGDS MDKYLLRIKT IRDQLMAAGE FVLDNDVMIA ALAGLPREYA 240 TIRTVILAKD SNVCMKEFRA LLIGAEREND VVMNSLTHNM AGLYVQGNNG GSSSVVYTNG 300 ASSSNSSANE PSSTGGVLTA TPLPQQMSFF PQSPMMQPVY GSNQSSYGSG GGCVGHLEQH 360 PQDNSRQQQS SAQFLGSQQR FYSGGQSRGN SSYRSGFKGK GSNYRNNSSW NGNVESRTTL 420 HPECQICQRR GHTAPNCFYR TAQSTSPHFN TKCQICGKMG HSALECYHRG NYSYQPSGPP 480 ASLGPTFPGH SSVIPSSQGC VPQPPNFAAH YSYQGHAPFM QGMNGPQNIH EPDLSYQVQP 540 AVQGLNVQSS PSYSNAANWI VDTGASHHMT SDLASLHQVS SFDGSEKIKI GNGQGLPIQN 600 TGSAIIKTHS HSILMKNVLH VPSLAVNLMS VKQLCKDNKC WFICDDINFF VQEKSKGMVH 660 RISCPYTPQQ NGLVERRHRH VVETAITLMN AAGLSQEFWY LSCAHDVYLI NRMASKSLQM 720 NSPYFGLYDK HPSLKDLKIY GSTVFPYLRH YNDSKLQPRS SMCIFLGYAL GYKGAICYNL 780 QTQKLVLSRH VVHDESVFPA KCKPSVILSS QSVPLSVNST PILVPFRASS EHDSISPEPV 840 QLQRQESGTQ ESESLSSSPI QDLQQPLSPV LGPAHSQVLP PISVSDWNPS SNSIPANPSR 900 THSMTTRLQT GAIERRDYTA FYACLPELQS LGVVNGSLCS DGFSFLAESV DCEEPKSFKI 960 TATNSHWQQA MQDEFDALKG QGTWVLVSSP PHRTIIGSKW VYKLKKNPDG SISRYKARLV 1020 AQGYTQEHGL DYSETFSPVV RHTTVRLILA LATSHNWELR QLDIKNAFLY GELQEEIYMK 1080 QPHGFVDSRV PNHVCKLVKS LYGLKQAPRA WNAKFTGVLP SMGFTVSQSD TSLFVKTDSE 1140 DIVMLLLYVD DIILTGSNIT KVQGVITALS EMFDLKDMGK LTYFLGLHIQ YKGNGDMFLS 1200 QTKYAQELIK RAGMENCRPA PTPSKPHTQL LLSEGQPLPD PSIYRSIVGA LQYLTFTRPD 1260 IAHSVNVVCQ YMTTPTDAHM LLVKRILRYL QGTLLCGITY PSGTDIHISA YSDADWASDI 1320 NTRS

Sequence ? help Back to Top

Protein Sequence Length: 1324 aa Download sequence

MLRQCLQWME DPQAQAHATV LVAKFFGRAG LFSFINGVSE SQRPGFLGLA LFQSLLFEAV  60
GRTINPVNGA TGLLLSGKWD VCQAAIETVL RGGALEPLPE YSRDNHYVRE HQVRVEQRQS  120
TKKKRPYFAV DDDVANFQPP DLNLCLTSAA GLTSRRKRRD WCKSAAEAWT NLEERFASVS  180
RTGVNHLKTE LHTVQKGGDS MDKYLLRIKT IRDQLMAAGE FVLDNDVMIA ALAGLPREYA  240
TIRTVILAKD SNVCMKEFRA LLIGAEREND VVMNSLTHNM AGLYVQGNNG GSSSVVYTNG  300
ASSSNSSANE PSSTGGVLTA TPLPQQMSFF PQSPMMQPVY GSNQSSYGSG GGCVGHLEQH  360
PQDNSRQQQS SAQFLGSQQR FYSGGQSRGN SSYRSGFKGK GSNYRNNSSW NGNVESRTTL  420
HPECQICQRR GHTAPNCFYR TAQSTSPHFN TKCQICGKMG HSALECYHRG NYSYQPSGPP  480
ASLGPTFPGH SSVIPSSQGC VPQPPNFAAH YSYQGHAPFM QGMNGPQNIH EPDLSYQVQP  540
AVQGLNVQSS PSYSNAANWI VDTGASHHMT SDLASLHQVS SFDGSEKIKI GNGQGLPIQN  600
TGSAIIKTHS HSILMKNVLH VPSLAVNLMS VKQLCKDNKC WFICDDINFF VQEKSKGMVH  660
RISCPYTPQQ NGLVERRHRH VVETAITLMN AAGLSQEFWY LSCAHDVYLI NRMASKSLQM  720
NSPYFGLYDK HPSLKDLKIY GSTVFPYLRH YNDSKLQPRS SMCIFLGYAL GYKGAICYNL  780
QTQKLVLSRH VVHDESVFPA KCKPSVILSS QSVPLSVNST PILVPFRASS EHDSISPEPV  840
QLQRQESGTQ ESESLSSSPI QDLQQPLSPV LGPAHSQVLP PISVSDWNPS SNSIPANPSR  900
THSMTTRLQT GAIERRDYTA FYACLPELQS LGVVNGSLCS DGFSFLAESV DCEEPKSFKI  960
TATNSHWQQA MQDEFDALKG QGTWVLVSSP PHRTIIGSKW VYKLKKNPDG SISRYKARLV  1020
AQGYTQEHGL DYSETFSPVV RHTTVRLILA LATSHNWELR QLDIKNAFLY GELQEEIYMK  1080
QPHGFVDSRV PNHVCKLVKS LYGLKQAPRA WNAKFTGVLP SMGFTVSQSD TSLFVKTDSE  1140
DIVMLLLYVD DIILTGSNIT KVQGVITALS EMFDLKDMGK LTYFLGLHIQ YKGNGDMFLS  1200
QTKYAQELIK RAGMENCRPA PTPSKPHTQL LLSEGQPLPD PSIYRSIVGA LQYLTFTRPD  1260
IAHSVNVVCQ YMTTPTDAHM LLVKRILRYL QGTLLCGITY PSGTDIHISA YSDADWASDI  1320
NTRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-42	LBD family protein