PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP013543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 306aa MW: 34573.6 Da PI: 5.1936 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.1 | 4.6e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s PCP013543.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 21.9 | 7.3e-09 | 80 | 149 | 9 | 78 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + ++ e+lqqe+ L++++++ ++++R + + L+ s eL++ e+ L + l+++ ++K+ ll ++++ PCP013543.1 80 HDLQNKEELQQEIGGLQQQLQMAEEQIRIYEPDPLKITSTVELESCEKSLMDTLTRVMQRKEYLLSNHLS 149 5668899**********************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVFTRY INLPDQEREH DLQNKEELQQ EIGGLQQQLQ MAEEQIRIYE PDPLKITSTV 120 ELESCEKSLM DTLTRVMQRK EYLLSNHLSS YDSSGIQQVL PGSFENEVAG WLSGAGHNQA 180 QIYDASAPLE HQLRNLSSTL YDPFSQGQSS NADPSTMGQC HVSVTNDSDG ELPLWHQAYT 240 TSSGHHSTLI PPTLLPQYQN SVVGSNMPEI MPHEQVEIPV GNSSLQPYNE VADYNHENKV 300 PQLNGH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 3e-94 | MIKC_MADS family protein |