PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013430.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 417aa MW: 47533.3 Da PI: 6.3946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013430.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123	2.5e-38	30	167	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+Gf F+Pt +el+ +yL+ k++g++ +++vi+e+ +i+++ePwdLp+ ++++++ewyfFs+ +k++ +++++ratk+g+Wk tg+ PCP013430.1 30 LPVGFGFRPTGQELIGYYLQMKLKGTDYVFSDVIPEInNICSHEPWDLPRiyfqnpgrsPIRSTNQEWYFFSTYKKTS--KNQTERATKEGFWKITGT 125 799***********************999**99******65788887775556888**997765..579*********** PP NAM 89 dkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127 +k+v+++ +++++g k++L+fy+g ++++ +ktdWvmhey PCP013430.1 126 KKPVKTEdQRTVIGEKRILTFYQGrvHDNDKKKTDWVMHEYY 167 *98666779*****8844567789*******7 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MAANGIHFTR VGDKVFPVGF HWTRVGDKVL PVGFGFRPTG QELIGYYLQM KLKGTDYVFS 60 DVIPEINNIC SHEPWDLPRI YFQNPGRSPI RSTNQEWYFF STYKKTSKNQ TERATKEGFW 120 KITGTKKPVK TEDQRTVIGE KRILTFYQGR VHDNDKKKTD WVMHEYYIPQ TNPNVNQRDL 180 VVCCVKKKSG ENVDAANCHE GESSTNNNAS DFGNQQLLAP HMDIEEEHTP QQQSMDIFEW 240 TKYSMLASAL GDHYHEMPSA FGANERDGTI EVPEISIMDW DAVESTFHWD SEPPVDSRHS 300 RGQKDVKLYQ IQAASSVNLV PKPQTDRIQV VTDEHSGTHQ RTKSDKEAEV AQGNNAEKGL 360 KQTQNAITTG NWKGCFISWE ASPPLTSPAS VYLFNMVLGV IMFCIFAWEA VLYGQWC

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MAANGIHFTR VGDKVFPVGF HWTRVGDKVL PVGFGFRPTG QELIGYYLQM KLKGTDYVFS  60
DVIPEINNIC SHEPWDLPRI YFQNPGRSPI RSTNQEWYFF STYKKTSKNQ TERATKEGFW  120
KITGTKKPVK TEDQRTVIGE KRILTFYQGR VHDNDKKKTD WVMHEYYIPQ TNPNVNQRDL  180
VVCCVKKKSG ENVDAANCHE GESSTNNNAS DFGNQQLLAP HMDIEEEHTP QQQSMDIFEW  240
TKYSMLASAL GDHYHEMPSA FGANERDGTI EVPEISIMDW DAVESTFHWD SEPPVDSRHS  300
RGQKDVKLYQ IQAASSVNLV PKPQTDRIQV VTDEHSGTHQ RTKSDKEAEV AQGNNAEKGL  360
KQTQNAITTG NWKGCFISWE ASPPLTSPAS VYLFNMVLGV IMFCIFAWEA VLYGQWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	2e-31	NAC family protein