PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013412.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 786aa MW: 88426.8 Da PI: 6.6593

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013412.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	109.4	2.2e-34	116	192	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C +d++e+k yhrrh+vC ++++a++v ++ +++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k PCP013412.1 116 RCQVPSCGVDIKELKGYHRRHRVCLACANASTVDIDCETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 192 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MEIQPPPPFD DTSTVWEWGD LFDFTVDDDL SISWGSAEKP DHEVGPAPED LLDDPNSNLS 60 RIRKRDPRLA CPNFLAGHIP CACPEIDAKM MELEEEEAGH GKKRVKTGRA PNGTARCQVP 120 SCGVDIKELK GYHRRHRVCL ACANASTVDI DCETKRYCQQ CGKFHVLSDF DEGKRSCRRK 180 LERHNNRRRR KPSDSKGVSG KESQKENQTE ETNFDGGATE DCLQLSSQLN EKEELLESQG 240 GQTPILCSVP ESQNIHSDSG VSFMASGETQ MDARKHDSNN SLSPSNCDNK SYSSMCPTGR 300 ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYIRPGC TILTIFIAMP KFMWMKLLED 360 PVSYLHEFLI VPEKMLSGRG NILIYLNDMI FRFVKDGTSV IKTKVEVRAP RLHYVHPTFF 420 EAGKPMEFVA CGSNLLQPKF RFLVSFSGKY LEYDYSPPSS HSQIDGDTTG NLDHQFFQIQ 480 VPLTESDCFG PAFIEIENES GLSNFIPVLI GDKEVCAEMI TLQKRFDESL SLQGLHFSSR 540 VSLSNSCEAS SMRHTAFSDV ILDIAWLLKK PLLENFQQIM TASQIQRFNY LLNFLISIKS 600 TTILDKVLQN LKSLMANKEL NSANNDSIDA DMRLLQNYMK YARDLLCKKF ESSGVSVRES 660 GRLVKKEDLV SQSQTCFQND GKSVAPFHYQ DTEITVDGRL GVTVGSTSNE RSETVPLLSK 720 KAVGKANFIK ELPSVAKCCT SREILRFRSS GMFLRFRPAL FVISVTAICA GLCAVLIHPH 780 KVACCA

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MEIQPPPPFD DTSTVWEWGD LFDFTVDDDL SISWGSAEKP DHEVGPAPED LLDDPNSNLS  60
RIRKRDPRLA CPNFLAGHIP CACPEIDAKM MELEEEEAGH GKKRVKTGRA PNGTARCQVP  120
SCGVDIKELK GYHRRHRVCL ACANASTVDI DCETKRYCQQ CGKFHVLSDF DEGKRSCRRK  180
LERHNNRRRR KPSDSKGVSG KESQKENQTE ETNFDGGATE DCLQLSSQLN EKEELLESQG  240
GQTPILCSVP ESQNIHSDSG VSFMASGETQ MDARKHDSNN SLSPSNCDNK SYSSMCPTGR  300
ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYIRPGC TILTIFIAMP KFMWMKLLED  360
PVSYLHEFLI VPEKMLSGRG NILIYLNDMI FRFVKDGTSV IKTKVEVRAP RLHYVHPTFF  420
EAGKPMEFVA CGSNLLQPKF RFLVSFSGKY LEYDYSPPSS HSQIDGDTTG NLDHQFFQIQ  480
VPLTESDCFG PAFIEIENES GLSNFIPVLI GDKEVCAEMI TLQKRFDESL SLQGLHFSSR  540
VSLSNSCEAS SMRHTAFSDV ILDIAWLLKK PLLENFQQIM TASQIQRFNY LLNFLISIKS  600
TTILDKVLQN LKSLMANKEL NSANNDSIDA DMRLLQNYMK YARDLLCKKF ESSGVSVRES  660
GRLVKKEDLV SQSQTCFQND GKSVAPFHYQ DTEITVDGRL GVTVGSTSNE RSETVPLLSK  720
KAVGKANFIK ELPSVAKCCT SREILRFRSS GMFLRFRPAL FVISVTAICA GLCAVLIHPH  780
KVACCA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	190	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein