PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013294.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 1701aa MW: 184221 Da PI: 4.3286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013294.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8.2e-06	1676	1699	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+ f+++G+Ck G+ C + H+ PCP013294.1 1676 GPRVCK-FFESGHCKKGAACDYLHP 1699 5689.8888***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1701 aa Download sequence
MEADEEDASK VNEPSISLQD DALPLPHTGE ELRNTEPQCD PESAPEPEHG GSELGVDGES 60 DSVASSVERG DGDGIGGGCK EGDTEMVDVA EAVAAVAETV ETDAVEDLGV AMEKSAADAG 120 EKMVVEEETN VIEGHVAEDR EVEEVTNVAE SHLREETEVK EEMHVAGGHV TEETEVEEEM 180 TVAGGHVTED TEVVKGMNVA EGYSTEEAEV GDVDDEVLET EVKVLPEEAA VANSDKQEAE 240 DSNVAETAEE TVLSVKDETE QMTGEAKGGE VEAETVGEET ETEVEGEEDG NETVGEEDGX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE AVGEEDVNEA VGVEAEAEAE 360 GEEAEAEAEG EEAEAGGDDE ENAADMLTET DTVGELDMVD DVMEETTEAE ETGAAEEEAE 420 EMEVEEEEET KRAGSGGKRK RVKSSKDTGK LLSKKKMEED VCFICFDGGE LVLCDRRGCP 480 KAYHPSCVNR DEAFFRAKGR WNCGWHLCSN CEKSAHYMCY TCTFSLCKAC IKDAVILCVR 540 GNKGFCETCM KTIMMIEKNE QGNKDKDEVD FDDKSSWEYL FKDYWIDLKE KLSLTLDDLA 600 QAKNPRKGST GRANKQESRD EPYDANDGGG SDSDNSENLD LVNPKKENDS TGWASKELLE 660 FVMHMRDGDE SALSQFDVQA LLLEYIKRNK LRDPRRKSQI VCDIRLQNLF GKPRVGHFEM 720 LKLLESHFLV KEDAHTDDLQ GSVVDTDDNQ LEVDGNSDTP VKASKDKRRK ARKKGDGKGP 780 QSNIDDFAAI DMHNINLIFL RRNLVEDLLD DLDNFQDKVV GSFVRIRISG SGQKQDLYRL 840 VQVTGTCKGA EPYKVGKRMT DILLEILNLN KTEIISIDII SNQEFTEDEC KRLRQSIKCG 900 LINRLTVGDV QDKAMVLQAV RVKDVKQLIA FSNLTGHLNA IDVELQQLHF KLVLNKECVE 960 KLQLLKTPEE RQRRLEETLE IHADPNMDPS YESEEEEDEG DDKRQDSYTR PTGFSFGRKG 1020 RDPISPRRGG SSFNDSWSGT KNYSNTNREL SRNTSNKGFY NKAENTTGAG ERVNDSWGQG 1080 RDRETQQTSH WEKKQIISSL ETGVRSTQSV VQSESSPGGG SGNSVAHFTT GAAQSTPTIN 1140 DSEKIWHYKD PSGKIQGPFS MAQLRKWNNT GYFPANLRVW KNTEKEEDSI LVTDVLAGKF 1200 QKDPSPVDSS FLKAQMVHDS CLSPAPSGKP QGGLFQRGTE GQAAGGSWGS ENEITSSSAR 1260 GTLSSVEVPK YSSDGWGTTN FPSPTPSQTP LGGARGQAYE SNWSPTPVHP TGSVLGGNGV 1320 MQPSTVATPE SALRVSGIDR SSSLSGINAA PKSETAVLLG STNTLQMHGQ VNASMNQVTD 1380 VKNLVSNLQN LVQTVANRTP GGDARGWASG SVPKQEMTAP GPVPGSETQP WAGAPSQRIE 1440 PINASTMPAQ HPAHGYWGNA SSTNNATQSI NTGNAAGNLP SSGFSGVPQS DPWRPQVPAN 1500 QSYIQPPAPS PQVPWSMGVP DNQSSLPRKG QENQNAGWAP IGGNPNMAWR GQVPGNTNMN 1560 WGAPGQGPGW AGPGQGPVPG NAAPNWVQPA AQGPPSLSGN PGWAPSGQGP AVANTNPGWA 1620 GQTQNGGDRF SNQRDRAPHG GDSGYGGGKP WNRQSSFGSG GGGGGGGGSS RLPFKGPRVC 1680 KFFESGHCKK GAACDYLHPD Q

Sequence ? help Back to Top

Protein Sequence Length: 1701 aa Download sequence

MEADEEDASK VNEPSISLQD DALPLPHTGE ELRNTEPQCD PESAPEPEHG GSELGVDGES  60
DSVASSVERG DGDGIGGGCK EGDTEMVDVA EAVAAVAETV ETDAVEDLGV AMEKSAADAG  120
EKMVVEEETN VIEGHVAEDR EVEEVTNVAE SHLREETEVK EEMHVAGGHV TEETEVEEEM  180
TVAGGHVTED TEVVKGMNVA EGYSTEEAEV GDVDDEVLET EVKVLPEEAA VANSDKQEAE  240
DSNVAETAEE TVLSVKDETE QMTGEAKGGE VEAETVGEET ETEVEGEEDG NETVGEEDGX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE AVGEEDVNEA VGVEAEAEAE  360
GEEAEAEAEG EEAEAGGDDE ENAADMLTET DTVGELDMVD DVMEETTEAE ETGAAEEEAE  420
EMEVEEEEET KRAGSGGKRK RVKSSKDTGK LLSKKKMEED VCFICFDGGE LVLCDRRGCP  480
KAYHPSCVNR DEAFFRAKGR WNCGWHLCSN CEKSAHYMCY TCTFSLCKAC IKDAVILCVR  540
GNKGFCETCM KTIMMIEKNE QGNKDKDEVD FDDKSSWEYL FKDYWIDLKE KLSLTLDDLA  600
QAKNPRKGST GRANKQESRD EPYDANDGGG SDSDNSENLD LVNPKKENDS TGWASKELLE  660
FVMHMRDGDE SALSQFDVQA LLLEYIKRNK LRDPRRKSQI VCDIRLQNLF GKPRVGHFEM  720
LKLLESHFLV KEDAHTDDLQ GSVVDTDDNQ LEVDGNSDTP VKASKDKRRK ARKKGDGKGP  780
QSNIDDFAAI DMHNINLIFL RRNLVEDLLD DLDNFQDKVV GSFVRIRISG SGQKQDLYRL  840
VQVTGTCKGA EPYKVGKRMT DILLEILNLN KTEIISIDII SNQEFTEDEC KRLRQSIKCG  900
LINRLTVGDV QDKAMVLQAV RVKDVKQLIA FSNLTGHLNA IDVELQQLHF KLVLNKECVE  960
KLQLLKTPEE RQRRLEETLE IHADPNMDPS YESEEEEDEG DDKRQDSYTR PTGFSFGRKG  1020
RDPISPRRGG SSFNDSWSGT KNYSNTNREL SRNTSNKGFY NKAENTTGAG ERVNDSWGQG  1080
RDRETQQTSH WEKKQIISSL ETGVRSTQSV VQSESSPGGG SGNSVAHFTT GAAQSTPTIN  1140
DSEKIWHYKD PSGKIQGPFS MAQLRKWNNT GYFPANLRVW KNTEKEEDSI LVTDVLAGKF  1200
QKDPSPVDSS FLKAQMVHDS CLSPAPSGKP QGGLFQRGTE GQAAGGSWGS ENEITSSSAR  1260
GTLSSVEVPK YSSDGWGTTN FPSPTPSQTP LGGARGQAYE SNWSPTPVHP TGSVLGGNGV  1320
MQPSTVATPE SALRVSGIDR SSSLSGINAA PKSETAVLLG STNTLQMHGQ VNASMNQVTD  1380
VKNLVSNLQN LVQTVANRTP GGDARGWASG SVPKQEMTAP GPVPGSETQP WAGAPSQRIE  1440
PINASTMPAQ HPAHGYWGNA SSTNNATQSI NTGNAAGNLP SSGFSGVPQS DPWRPQVPAN  1500
QSYIQPPAPS PQVPWSMGVP DNQSSLPRKG QENQNAGWAP IGGNPNMAWR GQVPGNTNMN  1560
WGAPGQGPGW AGPGQGPVPG NAAPNWVQPA AQGPPSLSGN PGWAPSGQGP AVANTNPGWA  1620
GQTQNGGDRF SNQRDRAPHG GDSGYGGGKP WNRQSSFGSG GGGGGGGGSS RLPFKGPRVC  1680
KFFESGHCKK GAACDYLHPD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein