PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013255.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 799aa MW: 88518.6 Da PI: 6.5421

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013255.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	8.1e-23	164	264	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F + +++el PCP013255.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL--RGENGEL 258 99**************************963.3445679**********************************************..4499999 PP EEEEE- CS B3 93 vvkvfr 98 ++++++ PCP013255.1 259 RLGIRK 264 999997 PP
2	Auxin_resp	122	4.3e-40	290	371	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras+seFv++++k+++++ ++v+ G+Rfkm+f+ +ds+err+sG+v+g+ dldp+rWpnSkWr+L PCP013255.1 290 VANAISTKSMFHVFYSPRASHSEFVIPYQKYVRSIANPVTSGTRFKMRFDRDDSPERRCSGVVTGIADLDPFRWPNSKWRCL 371 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MEIDLNHAVS EVEKNAYCNG DCGGVCVYCL SSSTSSSSSN SSSAPVASSI YLELWHACAG 60 PLISLPKKGN VVVYFPQGHL EQVASSSPFS PMEMPTFDLH PQIFCKVVNV QLLANKENDE 120 VYTHVTLLPQ PELVGTNLEG KELEELGVDE GDGGSPTKST PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFISQK 240 NLVSGDAVLF LRGENGELRL GIRKAVRPRN CLPDSIVGNQ NTYPSVLSLV ANAISTKSMF 300 HVFYSPRASH SEFVIPYQKY VRSIANPVTS GTRFKMRFDR DDSPERRCSG VVTGIADLDP 360 FRWPNSKWRC LMVRWDEDIG NDHQERVSPW EVDPSASLPS MNIQSSPRLK KLRTSLQGTQ 420 PIHSITAGGA GFKNFEESVK SSKVLQGQEN IGFISPLYGC DTVNRSQDFE MHAPAHLSLA 480 SNATQKVTID ERMRARHTSY TGFAESDRFP KVLQGQEICP LRSLTGKANF TLGDWESNIG 540 CMPFNVYQPP KPNHFSLVSE SLPNMYFPYG DIHRAGQEPT MCSNATNLTR ENMQINPYSM 600 QMGVTRNEVG LPNKPSEHKT QESTSALPAL VPNPRNPNDE GYNGTVTGCK LFGFSLTGEN 660 PSPNSQSSSK RSCTKVHKQG SLVGRAIDLA KLNGYGDLLT ELERLFGMEG LLRDSDKGWR 720 ILYTDSENDV MVVGDDPWHE FCNVVSKIHI YTQEEVEKMT IGMISDDTQS SLEQAPVTLE 780 VSKSSSVSQP DTSPTVIRV

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MEIDLNHAVS EVEKNAYCNG DCGGVCVYCL SSSTSSSSSN SSSAPVASSI YLELWHACAG  60
PLISLPKKGN VVVYFPQGHL EQVASSSPFS PMEMPTFDLH PQIFCKVVNV QLLANKENDE  120
VYTHVTLLPQ PELVGTNLEG KELEELGVDE GDGGSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFISQK  240
NLVSGDAVLF LRGENGELRL GIRKAVRPRN CLPDSIVGNQ NTYPSVLSLV ANAISTKSMF  300
HVFYSPRASH SEFVIPYQKY VRSIANPVTS GTRFKMRFDR DDSPERRCSG VVTGIADLDP  360
FRWPNSKWRC LMVRWDEDIG NDHQERVSPW EVDPSASLPS MNIQSSPRLK KLRTSLQGTQ  420
PIHSITAGGA GFKNFEESVK SSKVLQGQEN IGFISPLYGC DTVNRSQDFE MHAPAHLSLA  480
SNATQKVTID ERMRARHTSY TGFAESDRFP KVLQGQEICP LRSLTGKANF TLGDWESNIG  540
CMPFNVYQPP KPNHFSLVSE SLPNMYFPYG DIHRAGQEPT MCSNATNLTR ENMQINPYSM  600
QMGVTRNEVG LPNKPSEHKT QESTSALPAL VPNPRNPNDE GYNGTVTGCK LFGFSLTGEN  660
PSPNSQSSSK RSCTKVHKQG SLVGRAIDLA KLNGYGDLLT ELERLFGMEG LLRDSDKGWR  720
ILYTDSENDV MVVGDDPWHE FCNVVSKIHI YTQEEVEKMT IGMISDDTQS SLEQAPVTLE  780
VSKSSSVSQP DTSPTVIRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein