PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013227.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 542aa    MW: 59742.6 Da    PI: 8.8148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013227.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-09404427326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++Cr f+r GtC+yGd+C+F H+
  PCP013227.1 404 VRICRSFFRWGTCSYGDKCRFRHV 427
                  799******************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MASSSLGTLN AKITNLNFSR ARVGVLQSYG IITWTGRKPQ LYSCLSISRQ SEKVLHARSV  60
PSLEILSAKS LEEVSEESGD SGLTNQLIQN FDEVQSLLTA ICDTTTVAEV KLKIGGFRLN  120
VVRKLTEKIS TPPPPSPAPV STSENAKALD WNGAVPTQSV AITRQESSSR SIQTLLDRAA  180
DDGLVLIHSP RVGLFRRSRT IKGKRAPPSC KEKQIVKEGQ VICYIEQLGG ELPIESDVAG  240
EVIRILREDG DPVGYGDALV ALECNLVKLH TNMSTPLPTP QFFAQYLESG DSGRQMKHQI  300
PTEEKEIKAQ SDINSQAFKK PRTSEAVSNS NAASGQNKML PSYYKTQLCR KFQMGCCFSG  360
QRCSFAHGTS DLRRTLRDAQ GMETEKGNLV RRTWNGDHGS SNGVRICRSF FRWGTCSYGD  420
KCRFRHVSPE NIRDSSFISI STAGGSAQFD CKKSMELRKL CGYTTPECGS VQANSLTTYT  480
RGNNASNRRM GIATAYKQGQ STQCNLEWNE LEKLSRIYAD WIEDMPLLHG SSNKVECYSS  540
LV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-11C3H family protein