PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013202.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 1979aa MW: 215803 Da PI: 8.2527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013202.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.3e-07	1382	1402	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PCP013202.1 1382 PCPEFRK-GSCQKGDACEYAHG 1402 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1979 aa Download sequence
MQPLILLFLF SSASSSHLAG NEVDRLSLLA FKAEIVNDTL GILSPWNASL HFCHWPGITC 60 GRRHQRVTVL DLQSSGMAGH LSPHIGNLSF LRALYLHNNS FSHTIPPEIG RLFRLQKLRL 120 ENNSFSGHIP FNISSCSNLQ YLGLFGNTLG GELPTEIPSL SKLQFLDLGA NNFYGKIPPS 180 FGNLSSLQML SVPQNNLHGG IPNSLGQLKS LVIFSLAYNY LNGTIPPSIY NLSSIKVIYL 240 LRNNLHGTLP PGLGHTIFPN LEKFDFYFNQ FTGPLPASIS NASNLSQFSI SHNNFTGKVP 300 SLARLSNLYW FTLNYNNLGH NEEGDLEFIS SLVNCTNLEV LYIGFNNFGG VLPESFSNLS 360 TKIRVINFQY NQIRGNIPIG VGNLINLDTL NLDENLLVGT IPSSMGKPDK LYDLHLDSNE 420 LSGNVPSSLG NLTSLSRLTL GSNNLNGSIP QSLGDCRFMI HLDLSHNNLS GPIPKQFINL 480 LVHLNLSGNQ LTESIPLEGG NSQHLVLLDV SENKLSSEIP QSLGSCTSLA ILSLKENLLQ 540 GTIPKSLSSL RGLEYFDLSR NNLSGIIPNY LESSPFLQNL NLSFNDFEGA VPIQGVFKNA 600 SAVSVVGNAR LCGGIPHLRL PKCISKQAKR GLSPKLNLII SVSCGVVGLV LVLLLALLYR 660 SRKARALKST SGSSLGLSLL KVSYGDLLKA TDGFSASNLI GAGSFGSVYK GILNQHEERN 720 VAVKVLNLQT SRASRSFIAE CETLKSIRHR NLVKLLTACS SIDFQGNDFK ALVYEFMVNG 780 SLDEWLHISA QGVDRLANLP KNLNLTQRVN IAIDVACALD YLHNHSHMPI VHCDIKPNNI 840 LLDSDMTACV GDFGLARYFR DASCPSPLHE SSSSVIKGSI GYTPPEYGMG SEVATYGDVY 900 SYGILLLEML TSKRPTDEMF KDGMNLHSFV SMALPGRVEE ICDPLLVEIK ESNNSTNPRS 960 NRGNHAPNDQ RKRVVECLTS IARVGVACSV AMPRERKDMS NVVAELSLIR DVLTGCRDHT 1020 SSQTQRFIQI FEGHPGSCGD SRRHHIILKR WHKFLISSYP LENITRGLET TVAPPSGRRS 1080 VGKKKGQGSA RQIGRLPNGA RTRNGSRVLG IATLEMCKGS KDKLSPSNFI MESEFQKQKS 1140 VLVELSASDN LDAFRTEVEE MGFHVDEAGF WYGRRIGSKQ MGFEERTPLM IAAMFGSTKV 1200 LKYIIESGMV DVNRSCGSDR VTALHCAAAG GSTASLEVVK LLLDASADAN FVNAYGNMPV 1260 DVIAPALKSP CSSRRKAMEM LLRGDKSVME SDQIAIEEGD QQKVSSPQMP KEGSDKKEYP 1320 IDISLPDINN GIYGTDEFRM FTFKVKPCSR AYSHDWTECP FVHPGENARR RDPKKYPYSC 1380 VPCPEFRKGS CQKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCTRKVCF FAHRPEELRP 1440 VYASTGSAMP SPRSMSVSAA DMATLSPLAL GSSAMSMPIT STPPMSPLAA ASSPKNGGLW 1500 QNKVNLTPPT LQLPGSRLKS ACSARDLELE MELLGLDSHS SQHQQLWDEI SRLSSSPSFS 1560 RLGELKPTNL EDAFGSVDPS LLSQLQGHSQ KPSAPTHRQN MNQLRSSYPT NLSSSPVRKP 1620 SSFGLDSPSA LAAAVMNSRS AAFAQQRSQS FIDRGAMNHL SGLNAPVNSS TMRQSSDWGS 1680 PGGKLDWGMQ GDELNKLKKS ASFGFRSNNA GTPPGFKPST VDEPDVSWVN SLVKDVSSER 1740 SELYGADNKQ RAIKAEDVTS KHEERKKNRP LVKMCGITSA RDAALAAEAG ADFIGMIIWP 1800 NSKRSVSLSV AKEISRVARE YGAQPVGVFV DDDAETISRA KDASDLEFVQ LHGDGSRAAF 1860 PALVGGHRII YVLHANEDGS LLNQISAEQC SLVDWILVDS AKGGSGKGFD WTQFKLPNVR 1920 SKHGWLLAGG IKPENAGEAL SILKPQGIDV SSGICGACGI QKDQLRISSF MYAVHSVNY

Sequence ? help Back to Top

Protein Sequence Length: 1979 aa Download sequence

MQPLILLFLF SSASSSHLAG NEVDRLSLLA FKAEIVNDTL GILSPWNASL HFCHWPGITC  60
GRRHQRVTVL DLQSSGMAGH LSPHIGNLSF LRALYLHNNS FSHTIPPEIG RLFRLQKLRL  120
ENNSFSGHIP FNISSCSNLQ YLGLFGNTLG GELPTEIPSL SKLQFLDLGA NNFYGKIPPS  180
FGNLSSLQML SVPQNNLHGG IPNSLGQLKS LVIFSLAYNY LNGTIPPSIY NLSSIKVIYL  240
LRNNLHGTLP PGLGHTIFPN LEKFDFYFNQ FTGPLPASIS NASNLSQFSI SHNNFTGKVP  300
SLARLSNLYW FTLNYNNLGH NEEGDLEFIS SLVNCTNLEV LYIGFNNFGG VLPESFSNLS  360
TKIRVINFQY NQIRGNIPIG VGNLINLDTL NLDENLLVGT IPSSMGKPDK LYDLHLDSNE  420
LSGNVPSSLG NLTSLSRLTL GSNNLNGSIP QSLGDCRFMI HLDLSHNNLS GPIPKQFINL  480
LVHLNLSGNQ LTESIPLEGG NSQHLVLLDV SENKLSSEIP QSLGSCTSLA ILSLKENLLQ  540
GTIPKSLSSL RGLEYFDLSR NNLSGIIPNY LESSPFLQNL NLSFNDFEGA VPIQGVFKNA  600
SAVSVVGNAR LCGGIPHLRL PKCISKQAKR GLSPKLNLII SVSCGVVGLV LVLLLALLYR  660
SRKARALKST SGSSLGLSLL KVSYGDLLKA TDGFSASNLI GAGSFGSVYK GILNQHEERN  720
VAVKVLNLQT SRASRSFIAE CETLKSIRHR NLVKLLTACS SIDFQGNDFK ALVYEFMVNG  780
SLDEWLHISA QGVDRLANLP KNLNLTQRVN IAIDVACALD YLHNHSHMPI VHCDIKPNNI  840
LLDSDMTACV GDFGLARYFR DASCPSPLHE SSSSVIKGSI GYTPPEYGMG SEVATYGDVY  900
SYGILLLEML TSKRPTDEMF KDGMNLHSFV SMALPGRVEE ICDPLLVEIK ESNNSTNPRS  960
NRGNHAPNDQ RKRVVECLTS IARVGVACSV AMPRERKDMS NVVAELSLIR DVLTGCRDHT  1020
SSQTQRFIQI FEGHPGSCGD SRRHHIILKR WHKFLISSYP LENITRGLET TVAPPSGRRS  1080
VGKKKGQGSA RQIGRLPNGA RTRNGSRVLG IATLEMCKGS KDKLSPSNFI MESEFQKQKS  1140
VLVELSASDN LDAFRTEVEE MGFHVDEAGF WYGRRIGSKQ MGFEERTPLM IAAMFGSTKV  1200
LKYIIESGMV DVNRSCGSDR VTALHCAAAG GSTASLEVVK LLLDASADAN FVNAYGNMPV  1260
DVIAPALKSP CSSRRKAMEM LLRGDKSVME SDQIAIEEGD QQKVSSPQMP KEGSDKKEYP  1320
IDISLPDINN GIYGTDEFRM FTFKVKPCSR AYSHDWTECP FVHPGENARR RDPKKYPYSC  1380
VPCPEFRKGS CQKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCTRKVCF FAHRPEELRP  1440
VYASTGSAMP SPRSMSVSAA DMATLSPLAL GSSAMSMPIT STPPMSPLAA ASSPKNGGLW  1500
QNKVNLTPPT LQLPGSRLKS ACSARDLELE MELLGLDSHS SQHQQLWDEI SRLSSSPSFS  1560
RLGELKPTNL EDAFGSVDPS LLSQLQGHSQ KPSAPTHRQN MNQLRSSYPT NLSSSPVRKP  1620
SSFGLDSPSA LAAAVMNSRS AAFAQQRSQS FIDRGAMNHL SGLNAPVNSS TMRQSSDWGS  1680
PGGKLDWGMQ GDELNKLKKS ASFGFRSNNA GTPPGFKPST VDEPDVSWVN SLVKDVSSER  1740
SELYGADNKQ RAIKAEDVTS KHEERKKNRP LVKMCGITSA RDAALAAEAG ADFIGMIIWP  1800
NSKRSVSLSV AKEISRVARE YGAQPVGVFV DDDAETISRA KDASDLEFVQ LHGDGSRAAF  1860
PALVGGHRII YVLHANEDGS LLNQISAEQC SLVDWILVDS AKGGSGKGFD WTQFKLPNVR  1920
SKHGWLLAGG IKPENAGEAL SILKPQGIDV SSGICGACGI QKDQLRISSF MYAVHSVNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein