PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013147.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 598aa MW: 66656.8 Da PI: 6.7406

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013147.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	305	327	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ PCP013147.1 305 RLCFKFVSSGSCPRGESCNFQHD 327 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MAPPKILLSG DVSGNLKQLF KRVVSVNKSA AGPFDALLCV GQFFPYVADQ LDEFNDYIEG 60 RAQIPLPTYF IGDYGVSAAK VLLAATRDAG NQGFKLDGLK ICDNLYWLKG SGKFTLHGLS 120 VAYLSGQQYS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANTSDVP PVAYEPFGSD 180 NIVAELVAEI KPRYHIAGTK GVFYAREPYS NVEAVHVTRF LGLAPVGNKD KQKFIHALSP 240 TPASTMSAVE IRTKSTTTTL SPYTYEEKTA HSMEAGKRSS DSISDSQYWR YDVSQKRQKH 300 GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF EFMNKGKCER GPDCKFKHSL 360 QDEGESNSQQ RRGSGNANSN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV 420 LLIPIGHSPN TVSLPSECEI ELDKFQNALK KYYNKQGKEV VFFEWASRRT THANLQAVPV 480 PSAKAADVKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY AQLPDGTILS 540 HSIEENEKFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MAPPKILLSG DVSGNLKQLF KRVVSVNKSA AGPFDALLCV GQFFPYVADQ LDEFNDYIEG  60
RAQIPLPTYF IGDYGVSAAK VLLAATRDAG NQGFKLDGLK ICDNLYWLKG SGKFTLHGLS  120
VAYLSGQQYS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANTSDVP PVAYEPFGSD  180
NIVAELVAEI KPRYHIAGTK GVFYAREPYS NVEAVHVTRF LGLAPVGNKD KQKFIHALSP  240
TPASTMSAVE IRTKSTTTTL SPYTYEEKTA HSMEAGKRSS DSISDSQYWR YDVSQKRQKH  300
GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF EFMNKGKCER GPDCKFKHSL  360
QDEGESNSQQ RRGSGNANSN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TVSLPSECEI ELDKFQNALK KYYNKQGKEV VFFEWASRRT THANLQAVPV  480
PSAKAADVKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY AQLPDGTILS  540
HSIEENEKFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK