PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013106.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27094.9 Da PI: 9.8722

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013106.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.4	2.5e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRr+g+lKKA+ELSvLCdaeva+i+fs++gkl e+ss PCP013106.1 9 KRIENKINRQVTFAKRRKGLLKKAYELSVLCDAEVALIVFSTRGKLSEFSS 59 79***********************************************96 PP
2	K-box	96.1	5.4e-32	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+++++++s +q++ kLk ++e Lqr+qRhllGedL L +keLqqLe+qL+ slkkiR +K+++++ qi+elq+ke++l e+n+ Lr+klee PCP013106.1 80 ASQSAEDEQSRYQDYLKLKTKVEALQRTQRHLLGEDLVHLGMKELQQLENQLDMSLKKIRCTKTQFMHVQISELQRKEEMLLEANTGLRRKLEE 173 45778899***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRKGLLK KAYELSVLCD AEVALIVFST RGKLSEFSSG 60 PSMAKTLERY QRCTYGELGA SQSAEDEQSR YQDYLKLKTK VEALQRTQRH LLGEDLVHLG 120 MKELQQLENQ LDMSLKKIRC TKTQFMHVQI SELQRKEEML LEANTGLRRK LEESTAGLQR 180 SWNSNHQAAQ LEGFPGHLQF NNTLQIGYST PAVTNDEVNV ATSSEQSRRG FIPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-86	MIKC_MADS family protein