PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP012562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 792aa MW: 88132 Da PI: 7.2647 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 9.1e-10 | 95 | 119 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ PCP012562.1 95 FKTKLCCKFRA-GTCPYVTNCNFAHS 119 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.3 | 8.7e-06 | 168 | 193 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ PCP012562.1 168 YKGRHCKKFYTEEGCPYGDNCTFLHD 193 77888********************7 PP | |||||||
3 | zf-CCCH | 42.2 | 1.4e-13 | 228 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PCP012562.1 228 WKTRICNKWELTGYCPFGSKCHFAHG 253 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence |
MDYGRESNVV HVITGNSSGG GGGDIWSSDQ AVWATEDEYR VWNNGDALAD TMSNSNYDQR 60 QSQSRSGSEP PNKKSRNSQD ATSSNRSKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHSI 120 EELRRPPPNW QEIVAAHEEE KAVSSEPREE CQIPIVSAGY GVETPRSYKG RHCKKFYTEE 180 GCPYGDNCTF LHDEQSKNRE SVAISLGPGG YGGAAAAANG ANNKPSNWKT RICNKWELTG 240 YCPFGSKCHF AHGVAVYWLL NYRYKFWLNN ERLESVHKNW HGDVPVKVAS IQELHRYGGG 300 LVEGETRDSS SVAPDNKQGV MPSKTPGDAV VVSVPLVSYS DVYHLGVPSQ RSSIVIQRSG 360 PRAHQKWKGP DKISRIYAPS RQYYYYYYCC VPSSRNIHAL GLAGSASRSP ATRLTSRYCR 420 SVFVMQGMSS STTNTNYSAV PQHAASPPIT ILLTVLLVFF FAGFFSIYFC KCFMDHILAS 480 FQSTPSGDLV GTAVVPKEGL DVSLIESFPT FEYASVKDFR IEKYGLECAI CLVEFEDDSM 540 LRLLTVCCHV FHKDCIDLWL ESHKTCPFCR GNLEVVAPSL ADKSPVLAHE NHAMQDIHEG 600 HESVLLDLDA VRIDIKDEQG QDHHHHQGNY DNSSNNNNNM VAQGEQSSSS TTRDRDQDHD 660 QNHDRNKENE TERFSRSHST GHSIVRPRAE EDRYTLRLPE HVKKKLIRGH HNWTGSCTTF 720 GEFSRQRDNA GASCFGEASG SAGGGDINNA QNEITKIGRG LKTSVTLNHL SKGAYYEHNG 780 HEIHLAPIKV VS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-105 | C3H family protein |