PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012562.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 792aa    MW: 88132 Da    PI: 7.2647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012562.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309.1e-1095119126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  PCP012562.1  95 FKTKLCCKFRA-GTCPYVTNCNFAHS 119
                  69*********.*************8 PP

2zf-CCCH17.38.7e-06168193126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  PCP012562.1 168 YKGRHCKKFYTEEGCPYGDNCTFLHD 193
                  77888********************7 PP

3zf-CCCH42.21.4e-13228253126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  PCP012562.1 228 WKTRICNKWELTGYCPFGSKCHFAHG 253
                  8************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    
MDYGRESNVV HVITGNSSGG GGGDIWSSDQ AVWATEDEYR VWNNGDALAD TMSNSNYDQR  60
QSQSRSGSEP PNKKSRNSQD ATSSNRSKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHSI  120
EELRRPPPNW QEIVAAHEEE KAVSSEPREE CQIPIVSAGY GVETPRSYKG RHCKKFYTEE  180
GCPYGDNCTF LHDEQSKNRE SVAISLGPGG YGGAAAAANG ANNKPSNWKT RICNKWELTG  240
YCPFGSKCHF AHGVAVYWLL NYRYKFWLNN ERLESVHKNW HGDVPVKVAS IQELHRYGGG  300
LVEGETRDSS SVAPDNKQGV MPSKTPGDAV VVSVPLVSYS DVYHLGVPSQ RSSIVIQRSG  360
PRAHQKWKGP DKISRIYAPS RQYYYYYYCC VPSSRNIHAL GLAGSASRSP ATRLTSRYCR  420
SVFVMQGMSS STTNTNYSAV PQHAASPPIT ILLTVLLVFF FAGFFSIYFC KCFMDHILAS  480
FQSTPSGDLV GTAVVPKEGL DVSLIESFPT FEYASVKDFR IEKYGLECAI CLVEFEDDSM  540
LRLLTVCCHV FHKDCIDLWL ESHKTCPFCR GNLEVVAPSL ADKSPVLAHE NHAMQDIHEG  600
HESVLLDLDA VRIDIKDEQG QDHHHHQGNY DNSSNNNNNM VAQGEQSSSS TTRDRDQDHD  660
QNHDRNKENE TERFSRSHST GHSIVRPRAE EDRYTLRLPE HVKKKLIRGH HNWTGSCTTF  720
GEFSRQRDNA GASCFGEASG SAGGGDINNA QNEITKIGRG LKTSVTLNHL SKGAYYEHNG  780
HEIHLAPIKV VS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-105C3H family protein