PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012559.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 328aa    MW: 35558.6 Da    PI: 8.5923
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012559.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.31.9e-084444586
     trihelix 45 rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 +s +qC++k +nl+kryk ++++++++ s s +++p+f+++e
  PCP012559.1  4 KSIEQCNNKVDNLKKRYKLERQMMSSG-SVSANHWPWFQKME 44
                 6889**********************9.667779*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MQRKSIEQCN NKVDNLKKRY KLERQMMSSG SVSANHWPWF QKMEQIVGNS VAAKATFDND  60
KGVSSLGNTP RQSKSFGYGT TVSSLVGQMN NKVKSAPSIK WRRVVFKISS AALAGIAPNN  120
VDSMCGLVIG QLAMLFANEV ALACRNGVEV AILVGGPNFF CGDAWVTATG LDRIIELALE  180
KMGVQTRVQA AFSMHEIAEP YSRQRAIRHL EKSRVAIFAG IGASTGNHLF TTDTAAALRA  240
LEEAVLKGTN ADGVYDSNSQ DNNFTFDHIS MRELVTRGVT SIDTMALTFC EENGVPIVVF  300
NLLEPGNISK ALCGEQVGTL IDQTGRIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-129Trihelix family protein