PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012557.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 474aa MW: 53893 Da PI: 6.9143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012557.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.7	6.5e-23	99	198	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li a+ +++++ ++g +kk++W++vs++m e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ PCP012557.1 99 KWTDTMVRLLIMAVFYIGDDASDGPdptgkkkpaggllQKKGKWKSVSRAMVEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGaACRVVENQGLLEK 196 7*******************9866677788999999******************************************779**9999999 PP trihelix 85 le 86 ++ PCP012557.1 197 MD 198 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MEANGLFSGM LGLEMPLHQN TQNPQNPHHH MHQPQMVAYA PHHDPDNHQN PHQSVKQGHP 60 FAPKSKQIAL SDDDEPGFGA DDNSNGDNKK KISPWQRMKW TDTMVRLLIM AVFYIGDDAS 120 DGPDPTGKKK PAGGLLQKKG KWKSVSRAMV EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG 180 KGAACRVVEN QGLLEKMDLA PKMKEEVRKL MNSKHLFFRE MCAYHNSCGH GTVSGGSNGA 240 HNSPPEVATE PSEIPVWPQP HEQLQQRRCF HSSENAQAVT NSGRSETEGS KVIKGGSEDE 300 DEDYEDDDSD DEVVRGGSKG HMGHGNHEDN DDNDERAPQK VPRKEGCFSG SSSSTQLMQQ 360 LNCEVRVVLQ DVSKTAWEKK QWLKTRMIQL EEQQVSYQHR AFELEKQRLM WIKYSGKKER 420 YMERGKLENE RRRLENERML LVVRGNELEL LELHHQQQQQ NSSNKRSDPS SPTG

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MEANGLFSGM LGLEMPLHQN TQNPQNPHHH MHQPQMVAYA PHHDPDNHQN PHQSVKQGHP  60
FAPKSKQIAL SDDDEPGFGA DDNSNGDNKK KISPWQRMKW TDTMVRLLIM AVFYIGDDAS  120
DGPDPTGKKK PAGGLLQKKG KWKSVSRAMV EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG  180
KGAACRVVEN QGLLEKMDLA PKMKEEVRKL MNSKHLFFRE MCAYHNSCGH GTVSGGSNGA  240
HNSPPEVATE PSEIPVWPQP HEQLQQRRCF HSSENAQAVT NSGRSETEGS KVIKGGSEDE  300
DEDYEDDDSD DEVVRGGSKG HMGHGNHEDN DDNDERAPQK VPRKEGCFSG SSSSTQLMQQ  360
LNCEVRVVLQ DVSKTAWEKK QWLKTRMIQL EEQQVSYQHR AFELEKQRLM WIKYSGKKER  420
YMERGKLENE RRRLENERML LVVRGNELEL LELHHQQQQQ NSSNKRSDPS SPTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	7e-77	Trihelix family protein