PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012497.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 913aa MW: 101882 Da PI: 8.7107

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012497.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	1.9e-08	174	193	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f+ G C++G+ C+F H PCP012497.1 174 LCKDFMT-GRCRRGSDCQFLH 193 9****.*********** PP
2	zf-CCCH	21.7	3.6e-07	234	254	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++fa+ G C++G++CkF H PCP012497.1 234 YCSDFAK-GKCQRGSTCKFDHH 254 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MSRSNRKRSS KWDLVEGPQF EDANMQDNGW MGKAGRAFHH KESGRDWLSP ETNDLHRPKH 60 DLDLPSREPL AGSRGSHKNE SINKGCNRYM NDSMVWDGDG NCSTRMSPGL DEWREHRSRS 120 PKSGWRRSLR GRSRSRSRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI SAQLCKDFMT 180 GRCRRGSDCQ FLHEGNSNYD DSWESRHRKR DASRYSTPPD TKYYPLKSER YSVYCSDFAK 240 GKCQRGSTCK FDHHRASDGF SKGSTNENTR ERENERRNRD TSTERGAERV PHRSSDIPCK 300 FFAAGNCRNK KNCRFSHHIQ ARASPERKSQ DGRWGPGHSL NDANPAWSGP KWSDTGTLSD 360 AAMLTVDNRN IGVPEVRSSA WSVDDNRWGC DQNNENKNCA DRSVSHEAVE RNEKDANLWN 420 EDSVGAHVDL PKLRDTEKWL GDMSPDWNYT VQSSNHVGKQ EHSRITRGSE PSTQVHGAAS 480 IIEPMVAERS DFLQNKDVRV DGVISVPYDN RTAIEEPSSF RNNLNVTANI MARQSFDHSG 540 QSSSAFPFSG LSTIGQSKNL IPCGGVVKSP QDTLSPESKS VTKLDIGDAK TSLVDGIPQV 600 PNLVGGKELT ELTNLSASLA QLLGNQQQLP QIYAALNSHN APLLPKSEGS TEQLLAAAIQ 660 RDPTVVSHKP YDPMCDSIEH RISNNQMCLL PNSAGNTSID GKVENLSNVV SPSSLPSGAN 720 VNNYQQTNNP LEEPTLKDHQ LSQHGAKSEV VKGNGALGAE ESKSAQEENN SPENGPMEVT 780 GGKKLKEVKG SRAFRFALVE NVKELLKPSW KEGQVSKDAY KTIVKKVVDK VTSTMQGANI 840 PQTQEKIDHY LSFSKPKLTK LVQVASPVDE SIALSIFERI CGHLFHPFRS LASFYLPHHF 900 ESLVSIVPDD MIS

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MSRSNRKRSS KWDLVEGPQF EDANMQDNGW MGKAGRAFHH KESGRDWLSP ETNDLHRPKH  60
DLDLPSREPL AGSRGSHKNE SINKGCNRYM NDSMVWDGDG NCSTRMSPGL DEWREHRSRS  120
PKSGWRRSLR GRSRSRSRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI SAQLCKDFMT  180
GRCRRGSDCQ FLHEGNSNYD DSWESRHRKR DASRYSTPPD TKYYPLKSER YSVYCSDFAK  240
GKCQRGSTCK FDHHRASDGF SKGSTNENTR ERENERRNRD TSTERGAERV PHRSSDIPCK  300
FFAAGNCRNK KNCRFSHHIQ ARASPERKSQ DGRWGPGHSL NDANPAWSGP KWSDTGTLSD  360
AAMLTVDNRN IGVPEVRSSA WSVDDNRWGC DQNNENKNCA DRSVSHEAVE RNEKDANLWN  420
EDSVGAHVDL PKLRDTEKWL GDMSPDWNYT VQSSNHVGKQ EHSRITRGSE PSTQVHGAAS  480
IIEPMVAERS DFLQNKDVRV DGVISVPYDN RTAIEEPSSF RNNLNVTANI MARQSFDHSG  540
QSSSAFPFSG LSTIGQSKNL IPCGGVVKSP QDTLSPESKS VTKLDIGDAK TSLVDGIPQV  600
PNLVGGKELT ELTNLSASLA QLLGNQQQLP QIYAALNSHN APLLPKSEGS TEQLLAAAIQ  660
RDPTVVSHKP YDPMCDSIEH RISNNQMCLL PNSAGNTSID GKVENLSNVV SPSSLPSGAN  720
VNNYQQTNNP LEEPTLKDHQ LSQHGAKSEV VKGNGALGAE ESKSAQEENN SPENGPMEVT  780
GGKKLKEVKG SRAFRFALVE NVKELLKPSW KEGQVSKDAY KTIVKKVVDK VTSTMQGANI  840
PQTQEKIDHY LSFSKPKLTK LVQVASPVDE SIALSIFERI CGHLFHPFRS LASFYLPHHF  900
ESLVSIVPDD MIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RGRSRSRSR
2	130	140	RGRSRSRSRSR
3	130	142	RGRSRSRSRSRSK
4	132	140	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-09	C3H family protein