PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012438.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 521aa MW: 59028.6 Da PI: 6.3136

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012438.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.3	9.9e-39	18	145	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+GfrFhPt+eelv++yLk k++g + + ++i+e++i+++ePwdLp ++ ++++ewyf+ + k++ ++ +rat++g+Wk tg++k v+++++ PCP012438.1 18 LPVGFRFHPTEEELVSHYLKLKLRGMDSLVGDAIREINICNYEPWDLPaISLIKSDDEWYFYNRPIYKKNGRNEIERATDTGFWKITGQEKIVKARDN 115 79***********************999899***********545556789*******99999********************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyr 127 +++g k++L+f +gr +++ t+Wvmhe+ PCP012438.1 116 KTIGKKRILTFRQGRGRNAPVTNWVMHEFY 145 **************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MASNGIRFTR LEVGDLLLPV GFRFHPTEEE LVSHYLKLKL RGMDSLVGDA IREINICNYE 60 PWDLPAISLI KSDDEWYFYN RPIYKKNGRN EIERATDTGF WKITGQEKIV KARDNKTIGK 120 KRILTFRQGR GRNAPVTNWV MHEFYIPQIN PNANQRDFVL CHVKKKSGKN TDGATCDEGE 180 SSNYNNAPDF ENQLQPAHNM HVEEEHNQPP QNVDIFQRHM GSLLADAHSN NNYHGMEENS 240 EEFVNGFFAD DPYQDYSEEI THDNVFNDST MPQSPRKVYL KDCGVSSDSD TEVQHRAAEG 300 SSLQMLSVPQ ASSSHSRREE GVMLRNQTLR QAASSKPQTD RLQSVSDEDS GTHQITSRLQ 360 SASRPINALK LKSASSVDVD AVSLQINSIQ LACNEHYNNE RTRRRTYPTS ALVALGKPNE 420 LEQQQSKAKE AAERRAAVDF PPKRNFISES NKDIEESNNT EKGLKQTHNA TTAGNWMSCS 480 LISWETSPPL TSPPSVYIFN TVLGAILLFV FARELVLYGQ W

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MASNGIRFTR LEVGDLLLPV GFRFHPTEEE LVSHYLKLKL RGMDSLVGDA IREINICNYE  60
PWDLPAISLI KSDDEWYFYN RPIYKKNGRN EIERATDTGF WKITGQEKIV KARDNKTIGK  120
KRILTFRQGR GRNAPVTNWV MHEFYIPQIN PNANQRDFVL CHVKKKSGKN TDGATCDEGE  180
SSNYNNAPDF ENQLQPAHNM HVEEEHNQPP QNVDIFQRHM GSLLADAHSN NNYHGMEENS  240
EEFVNGFFAD DPYQDYSEEI THDNVFNDST MPQSPRKVYL KDCGVSSDSD TEVQHRAAEG  300
SSLQMLSVPQ ASSSHSRREE GVMLRNQTLR QAASSKPQTD RLQSVSDEDS GTHQITSRLQ  360
SASRPINALK LKSASSVDVD AVSLQINSIQ LACNEHYNNE RTRRRTYPTS ALVALGKPNE  420
LEQQQSKAKE AAERRAAVDF PPKRNFISES NKDIEESNNT EKGLKQTHNA TTAGNWMSCS  480
LISWETSPPL TSPPSVYIFN TVLGAILLFV FARELVLYGQ W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	3e-38	NAC family protein