PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012394.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 566aa MW: 65158.2 Da PI: 5.8952

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012394.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.5e-29	114	199	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+r+ k+Ckek+enl k+ykk+keg+++r ++ +++++f+qlea PCP012394.1 114 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRTGKKCKEKFENLYKYYKKTKEGKSGR--QDGKHYRFFRQLEA 199 8***********************************999*************************98..55667*****85 PP
2	trihelix	66.6	5e-21	414	500	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt++ev Li++r++ e ++++++ ++++ W+e+++km + g++rs +Ckekwen++ ++ ++e++k +++e++++ yf+q+ PCP012394.1 414 RWTEHEVASLIQLRTSSELTSQESEylKEEGVWKEIAAKMGSLGYTRSGGECKEKWENISVCFRMTTEWNKMHRQETKTNNMYFSQM 500 8*******************9877699****************************************999999999**9 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MDDYGPPDLR HLMASKTQFC KPLQFPEQFS VHHNLTPPPP PPPHYHHHPI LVGSEIVAAA 60 GLLDHHRYTS MITTTACHPS ITISSNASAA AAMYGIELEH GWNNIDGANN NNSRWPRQET 120 LTLLEIRSAL DSKFKETNQK GPLWDEVSRI MAEEHGFQRT GKKCKEKFEN LYKYYKKTKE 180 GKSGRQDGKH YRFFRQLEAI YGDHHQSSNQ SSIYDRSNPL LCHTTPSGSL DRDQNQEEVV 240 VQDQKIISCE SLSSNNSTEF DQNPPSENND DNESLSAIGY FMMNQSMESL KNENKSYATQ 300 VKKKWKAKVE EFVSSQMGKV IKTQEELMEK MVKSIEDSAD ERIAKEEEWR KQEAAMYERE 360 VHEFWAKERA WVETRDAAIM EALSKYTGQG AYNNNGKDDI AKETGNDNRK NYPRWTEHEV 420 ASLIQLRTSS ELTSQESEYL KEEGVWKEIA AKMGSLGYTR SGGECKEKWE NISVCFRMTT 480 EWNKMHRQET KTNNMYFSQM SCYEEGQEVW NQRQDGMGVQ QMDEGLSPLC SNMDVNSSSL 540 HIPFNGGENL WDERYSHATN SPRDNR

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MDDYGPPDLR HLMASKTQFC KPLQFPEQFS VHHNLTPPPP PPPHYHHHPI LVGSEIVAAA  60
GLLDHHRYTS MITTTACHPS ITISSNASAA AAMYGIELEH GWNNIDGANN NNSRWPRQET  120
LTLLEIRSAL DSKFKETNQK GPLWDEVSRI MAEEHGFQRT GKKCKEKFEN LYKYYKKTKE  180
GKSGRQDGKH YRFFRQLEAI YGDHHQSSNQ SSIYDRSNPL LCHTTPSGSL DRDQNQEEVV  240
VQDQKIISCE SLSSNNSTEF DQNPPSENND DNESLSAIGY FMMNQSMESL KNENKSYATQ  300
VKKKWKAKVE EFVSSQMGKV IKTQEELMEK MVKSIEDSAD ERIAKEEEWR KQEAAMYERE  360
VHEFWAKERA WVETRDAAIM EALSKYTGQG AYNNNGKDDI AKETGNDNRK NYPRWTEHEV  420
ASLIQLRTSS ELTSQESEYL KEEGVWKEIA AKMGSLGYTR SGGECKEKWE NISVCFRMTT  480
EWNKMHRQET KTNNMYFSQM SCYEEGQEVW NQRQDGMGVQ QMDEGLSPLC SNMDVNSSSL  540
HIPFNGGENL WDERYSHATN SPRDNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	7e-90	Trihelix family protein