PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012263.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 987aa MW: 109792 Da PI: 8.4268

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012263.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.9	1.2e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++s++e +eL++ g+t +qV+ +F +R + +k PCP012263.1 66 KRPRDLLNPKAIKYMQSIFSIKDTISKKESRELSAVFGVTVTQVRDFFNSQRSRVRK 122 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence
MENPSVEMEI GTSAESLGKF LDSQRELFHS QIDQLQRIVG TQCKLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSIFSIKDTI SKKESRELSA VFGVTVTQVR DFFNSQRSRV 120 RKLVQLSREK ALKSGEHEDL RDGVSTSPDS LIPSDPVPLN SVGPSNVDDA PSCSTQDNAL 180 SGLDDLDKRF VEDIFNLMRK EETFSGQVKL MEWIMRIENS SVLCWFLTNG GVMILVTWLS 240 QAAVEEQTSV LLVILKVLCH LPLHKALPLH MSAVLQSVNR LRFYRTPDIS NRARVLLSRW 300 SKLLARSQAM KKPNGIKTSS DSKDIDEVMG DSESWKSNMD ISEDILGTPF EGAENRKLEA 360 SEPLKLLTAS PDESNKKNIL GVSSSLAEFR ERRKVQLVEQ PGQSAGRSVP ATRTTTVSQA 420 RPMSADDIQK AKMRAQFMQS KYGKSRSSHE NKELKTEGVD KLTISQASIL PMVPKVPIRS 480 NIEEPKKPAT NPLKEREIPN KPETSLAPKR SLDLKEPILE KCPRIQIPWK MPPDINLFHV 540 LSFRSAEIKL DPSWSVGGGE CCKEIEVQRN RNRREKETIY RTVQEILSNP KEPWDIEMDY 600 DDSLTPEIPI EQPPDVADTT ETQASHNREV YNAETMVVPS QGANNVASFP PALSQINNAS 660 AAEPDLELLA VLLKNPELVF ALTSGDAANL ASEDTVKLLD MIKSGGAGVA GNVNGLGRKT 720 ERVEVSLPSP TPSSNPGTSG WKGDAGRNAF PQQMPQVSSA HHIIPPQRLS TSQPAVPSYS 780 PDYHRMQSPA SEMALTMKNT HFHNVSNTAV PPVWGEGTIN VERAPLSNSY NVAERQQPLF 840 STPARQQRQP QPVQQSPFSE PHIPMYTPKQ PMGKPGPPSD SWRARQDLPS NYHYIENPNQ 900 YNASYGGHLQ AHLLPGPSWE GNEHVGGQQD FQSWSPDNSP SRNPGYMYGR EPRTNPGQDY 960 RSRGRNPAGY RDHNRQQGNR WPKRGGR

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence

MENPSVEMEI GTSAESLGKF LDSQRELFHS QIDQLQRIVG TQCKLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QSIFSIKDTI SKKESRELSA VFGVTVTQVR DFFNSQRSRV  120
RKLVQLSREK ALKSGEHEDL RDGVSTSPDS LIPSDPVPLN SVGPSNVDDA PSCSTQDNAL  180
SGLDDLDKRF VEDIFNLMRK EETFSGQVKL MEWIMRIENS SVLCWFLTNG GVMILVTWLS  240
QAAVEEQTSV LLVILKVLCH LPLHKALPLH MSAVLQSVNR LRFYRTPDIS NRARVLLSRW  300
SKLLARSQAM KKPNGIKTSS DSKDIDEVMG DSESWKSNMD ISEDILGTPF EGAENRKLEA  360
SEPLKLLTAS PDESNKKNIL GVSSSLAEFR ERRKVQLVEQ PGQSAGRSVP ATRTTTVSQA  420
RPMSADDIQK AKMRAQFMQS KYGKSRSSHE NKELKTEGVD KLTISQASIL PMVPKVPIRS  480
NIEEPKKPAT NPLKEREIPN KPETSLAPKR SLDLKEPILE KCPRIQIPWK MPPDINLFHV  540
LSFRSAEIKL DPSWSVGGGE CCKEIEVQRN RNRREKETIY RTVQEILSNP KEPWDIEMDY  600
DDSLTPEIPI EQPPDVADTT ETQASHNREV YNAETMVVPS QGANNVASFP PALSQINNAS  660
AAEPDLELLA VLLKNPELVF ALTSGDAANL ASEDTVKLLD MIKSGGAGVA GNVNGLGRKT  720
ERVEVSLPSP TPSSNPGTSG WKGDAGRNAF PQQMPQVSSA HHIIPPQRLS TSQPAVPSYS  780
PDYHRMQSPA SEMALTMKNT HFHNVSNTAV PPVWGEGTIN VERAPLSNSY NVAERQQPLF  840
STPARQQRQP QPVQQSPFSE PHIPMYTPKQ PMGKPGPPSD SWRARQDLPS NYHYIENPNQ  900
YNASYGGHLQ AHLLPGPSWE GNEHVGGQQD FQSWSPDNSP SRNPGYMYGR EPRTNPGQDY  960
RSRGRNPAGY RDHNRQQGNR WPKRGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein