PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP012230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 40720.1 Da PI: 7.0171 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.2e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC f+ + G+C G +CkF+H+ PCP012230.1 90 KSILCEFYKA-GQCAKGFKCKFSHD 113 6679**7777.*************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence |
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQS LKQSVEPKAD PSKTAVKKKK 60 EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DNEETMEGWD QETLEKVVES KKNEYKQNKP TDIVCKYFLE AVEKKQYGWF 180 WVCPNGGKNC HYRHALPPGY VLKSQMKALL EEESEKIPIE EEIENQRAKL TTSTPMTPEL 240 FMQWRKKKIA ERDAGLAVQM AERAKNDRMS GRELFLSDSS LFVDDAEAHG NYQREQEPAV 300 SEKKVIESSN GHGPSNPATA GGDAEVTNFN DDDELDIDEL NELEASLAKV TIQEPGARA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-163 | C3H family protein |