PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012211.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 366aa MW: 40578.8 Da PI: 6.6673

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012211.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	193	247	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PCP012211.1 193 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 247 677889***********************************************98 PP
2	HD-ZIP_I/II	126.2	1.4e-40	193	283	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PCP012211.1 193 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 283 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MELCLSLGDH EALAEPSDQT TTTKTTGFCT NLSIGPSCAA APPPPPPPRD EEADKKQDDD 60 DDHQHIHVDD HTPLQLDLLP WPTSSCNQIQ NAGVLSMNVI NKAQEVVAAA SSSHTNSGSS 120 SFHIMDIGLC SNNNHSKGSA GDGLNNHNVY NYKRRAHSAE GQGDDEGERA YNSRVGSDDE 180 EDDIINGNAN TCRKKLRLSK EQSAFLEESF KEHHTLNPKQ KLALAKQLNL RPRQVEVWFQ 240 NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLNKELQELR ALKATHHSNP FYMQSPATTL 300 TMCPSCESTA TTSNAAINTT NNTYNNNNNK VMSISTTKVQ AAKFPLNRPS FYPFFQPKSH 360 PSSAAS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MELCLSLGDH EALAEPSDQT TTTKTTGFCT NLSIGPSCAA APPPPPPPRD EEADKKQDDD  60
DDHQHIHVDD HTPLQLDLLP WPTSSCNQIQ NAGVLSMNVI NKAQEVVAAA SSSHTNSGSS  120
SFHIMDIGLC SNNNHSKGSA GDGLNNHNVY NYKRRAHSAE GQGDDEGERA YNSRVGSDDE  180
EDDIINGNAN TCRKKLRLSK EQSAFLEESF KEHHTLNPKQ KLALAKQLNL RPRQVEVWFQ  240
NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLNKELQELR ALKATHHSNP FYMQSPATTL  300
TMCPSCESTA TTSNAAINTT NNTYNNNNNK VMSISTTKVQ AAKFPLNRPS FYPFFQPKSH  360
PSSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	250	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-57	HD-ZIP family protein