PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012109.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 469aa MW: 51876.1 Da PI: 5.2634

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012109.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	85.9	3e-27	144	209	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg PCP012109.1 144 RYDSSLGLLTKKFINLIKRAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 209 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MSGCARAPNR QPAPATAATG GGAQILPPLR RHLAFESTKP QPFPPDNYHR FAGGARRAGD 60 QEPEAIYVRS PQLTRKDNNE VEYSDWTCSP GNTNIIQSPL LTPPMSTKGG RVNNRSKASK 120 GGRSGPQTPV SNVGSPSTPA GSCRYDSSLG LLTKKFINLI KRAEDGILDL NKAAETLEVQ 180 KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASMPGELDG DLSILQAEVE NLSLQERRLD 240 DRIREMQDKL RDLSEDENNQ KWLFVTEDDI KGLPCFHNET LIAIKAPHGT TLEVPDPDEA 300 VDYPRRRYRI ILRSTMGPID VYLVSQFEEK FEDVHGAEPP VSFPMASGSG SSEHPITEVV 360 TVESSGKEIE PWPQQAHHLC SDLNTSREFA GGMMKIVPSD VDNDADYWLL SDAEVSITDM 420 WRTDSGVGWN GTDILHADFG VTDVSTPRLQ TPPSRVVEVP SHAVNFAQR

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MSGCARAPNR QPAPATAATG GGAQILPPLR RHLAFESTKP QPFPPDNYHR FAGGARRAGD  60
QEPEAIYVRS PQLTRKDNNE VEYSDWTCSP GNTNIIQSPL LTPPMSTKGG RVNNRSKASK  120
GGRSGPQTPV SNVGSPSTPA GSCRYDSSLG LLTKKFINLI KRAEDGILDL NKAAETLEVQ  180
KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASMPGELDG DLSILQAEVE NLSLQERRLD  240
DRIREMQDKL RDLSEDENNQ KWLFVTEDDI KGLPCFHNET LIAIKAPHGT TLEVPDPDEA  300
VDYPRRRYRI ILRSTMGPID VYLVSQFEEK FEDVHGAEPP VSFPMASGSG SSEHPITEVV  360
TVESSGKEIE PWPQQAHHLC SDLNTSREFA GGMMKIVPSD VDNDADYWLL SDAEVSITDM  420
WRTDSGVGWN GTDILHADFG VTDVSTPRLQ TPPSRVVEVP SHAVNFAQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-173	E2F/DP family protein