PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP012100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 245aa MW: 27545.6 Da PI: 6.8996 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.5e-18 | 148 | 182 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l PCP012100.1 148 CTHCASEKTPQWRAGPMGPKTLCNACGVRYKSGRL 182 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MEDFFPVDDL LDLSNDALFS PSTASSTNSM DLHHHPPPLD HLHGTTTTSL FAPATTYTDF 60 TNNLCVPSDD VAELEWLSRF IDDSLTDVPA TDLAGSASFQ NEASFMFPSR VRTKLSKWAG 120 PPDPQNSPAR PNRPRREPSE ASPSPLRCTH CASEKTPQWR AGPMGPKTLC NACGVRYKSG 180 RLVPEYRPAA SPTFVLTQHS NSHRKVLELR RQKEASQQQA PQEQPQQHRP HQQQFYLHRD 240 EFRVC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-55 | GATA family protein |