PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011937.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 923aa MW: 101632 Da PI: 6.5386

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011937.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	642	683	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eE+ lvda+++ G++ W+ Ia++++ gRt++ +k++w+ PCP011937.1 642 DGWTEEEERVLVDAHAKVGNR-WAEIAKRIP-GRTENAIKNHWN 683 56*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence
MRTCMIHDEQ SREFGASALS EIKQLKSKVG GIGDGNLREV IMEAVRSSFS QSFVDDEREN 60 CLGHGGGDIN TDQLVGDMSS NFKLDAAKGH DSEDLEVGSI NEGVHLILPE RRAVTLTDRL 120 FRGSRGGHGE IVSIPIGGDE KHEHRSARKS GPLLSGTAYC ISSCKLSTII VVLLGFSGVV 180 TVEKLNWKLV RVWIPVNVIF IGMLVSGMYS TWRIILVPET SESESVDCHV YDVKFERVLS 240 LPYVLQIISS ISSGITDISF GTVGYAWLLS NCVQTASYSL TLQRVMDEEK KYTRSESLNE 300 VSMVVLNNLV SLPFAAFLII LFDEWEYIMN VDVIKLPMFW VVATASGLLG LAISFTSMWF 360 LHQTGPTMYS LVGSLNKSPI SLAGLVLFKV PLSLPNLFSI LFDLKSGSPP TKRKMNVARP 420 ITLNTKNSLL KRCLNFQMSL FMEGGRGGGG GGGGGDGDGD YGVYGFTNNT QDPPQHHSIY 480 KTGPPLTAID RFLWGSHQSQ NNASNIDHQK VVFSNELSGF ASFCGGGGAI FGHEAEASWP 540 NNYSITNHLQ EPSFVDELFL EQGDALMMSW VQEQNPNTTG GFGEEGRVSE RSCKAVGKRS 600 KKGLTAATLI KGQWTAEEDS SSSRTLKHLI FRLEVNIFVK KDGWTEEEER VLVDAHAKVG 660 NRWAEIAKRI PGRTENAIKN HWNATKRRQT SKRKNKQPEG NNGNHKNKPH SSILQNYIRS 720 KNLMNNSSNI SNVSTSTPTS SSTLSQNDPS KTHLNTLVKE PSDQSTTSNC FGSPLNLADS 780 FYDELVFMQT FFTNNPHNLN HPQQPSNSTD NNVELIVSPM EPSKNPNMYD FATTSTTSTP 840 SPATTTPLYS DLYLSYLLNG ADNSSSYNSN DHHPHLGFCN TNMEYLASQD HHHLQAAASS 900 NEKREMDLVE MVSASQCTQG TSF

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence

MRTCMIHDEQ SREFGASALS EIKQLKSKVG GIGDGNLREV IMEAVRSSFS QSFVDDEREN  60
CLGHGGGDIN TDQLVGDMSS NFKLDAAKGH DSEDLEVGSI NEGVHLILPE RRAVTLTDRL  120
FRGSRGGHGE IVSIPIGGDE KHEHRSARKS GPLLSGTAYC ISSCKLSTII VVLLGFSGVV  180
TVEKLNWKLV RVWIPVNVIF IGMLVSGMYS TWRIILVPET SESESVDCHV YDVKFERVLS  240
LPYVLQIISS ISSGITDISF GTVGYAWLLS NCVQTASYSL TLQRVMDEEK KYTRSESLNE  300
VSMVVLNNLV SLPFAAFLII LFDEWEYIMN VDVIKLPMFW VVATASGLLG LAISFTSMWF  360
LHQTGPTMYS LVGSLNKSPI SLAGLVLFKV PLSLPNLFSI LFDLKSGSPP TKRKMNVARP  420
ITLNTKNSLL KRCLNFQMSL FMEGGRGGGG GGGGGDGDGD YGVYGFTNNT QDPPQHHSIY  480
KTGPPLTAID RFLWGSHQSQ NNASNIDHQK VVFSNELSGF ASFCGGGGAI FGHEAEASWP  540
NNYSITNHLQ EPSFVDELFL EQGDALMMSW VQEQNPNTTG GFGEEGRVSE RSCKAVGKRS  600
KKGLTAATLI KGQWTAEEDS SSSRTLKHLI FRLEVNIFVK KDGWTEEEER VLVDAHAKVG  660
NRWAEIAKRI PGRTENAIKN HWNATKRRQT SKRKNKQPEG NNGNHKNKPH SSILQNYIRS  720
KNLMNNSSNI SNVSTSTPTS SSTLSQNDPS KTHLNTLVKE PSDQSTTSNC FGSPLNLADS  780
FYDELVFMQT FFTNNPHNLN HPQQPSNSTD NNVELIVSPM EPSKNPNMYD FATTSTTSTP  840
SPATTTPLYS DLYLSYLLNG ADNSSSYNSN DHHPHLGFCN TNMEYLASQD HHHLQAAASS  900
NEKREMDLVE MVSASQCTQG TSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	452	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-32	MYB family protein