PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011795.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 383aa MW: 42733.8 Da PI: 7.5822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011795.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	220	239	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ PCP011795.1 220 FSCSICSKTFNRYNNLQMHM 239 89*****************9 PP
2	zf-C2H2	14.2	0.00013	305	327	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F k + ++H +++ PCP011795.1 305 FMCKRCGKAFAVKGDWRTHEKNC 327 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MADPYNSSNL YNNGWINFMP LRPHHCPSLL STATSFANSS RGTPFNLNIS NPPHSYSSHN 60 LFIDYKSSNS QSQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEER GHEPSSGSPI 120 APMEEETMNK YDAVYDDGDG DNDDENLTVA LHIGLPSSSN SGNVQSQFAD QDHITEGAIS 180 STISHAVSSG NPIVAVDRLN KGAHYWIPTP AQILSGPTQF SCSICSKTFN RYNNLQMHMW 240 GHGSQYRKGP DSLKRTQPTA MLRLPCYCCA PGCKHNIDNP RGAKPLKDFR TLQVHYKRKH 300 GVRSFMCKRC GKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGRGHGSFD 360 IKCFEEEDEP APEIEHEAEA TRW

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MADPYNSSNL YNNGWINFMP LRPHHCPSLL STATSFANSS RGTPFNLNIS NPPHSYSSHN  60
LFIDYKSSNS QSQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEER GHEPSSGSPI  120
APMEEETMNK YDAVYDDGDG DNDDENLTVA LHIGLPSSSN SGNVQSQFAD QDHITEGAIS  180
STISHAVSSG NPIVAVDRLN KGAHYWIPTP AQILSGPTQF SCSICSKTFN RYNNLQMHMW  240
GHGSQYRKGP DSLKRTQPTA MLRLPCYCCA PGCKHNIDNP RGAKPLKDFR TLQVHYKRKH  300
GVRSFMCKRC GKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGRGHGSFD  360
IKCFEEEDEP APEIEHEAEA TRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	DSLKRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-106	C2H2 family protein