PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011599.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 365aa MW: 40173.5 Da PI: 8.4243

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011599.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PCP011599.1 157 YECKTCNRTFPSFQALGGHRASH 179 99**********99999998887 PP
2	zf-C2H2	11	0.0013	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ F++ L H+r+H PCP011599.1 250 HECSICSAEFTSGQALGGHMRRH 272 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEAEAAGGDH NQEEVRILGC KEQHNNNINI MKGKRTKRLR PQSPIPFAIP RNSSSPEGGV 60 GGHRGGDGGE NNNDCINSTN LSPTTSAELF QDSTTSEEEE MANCLILLAQ GQSRAASSSP 120 DHHHQPHKHI TTSSRRFLEA TTTPAGKVAG AAGYYVYECK TCNRTFPSFQ ALGGHRASHK 180 KPKATIGDDH KNKHFGIGLL PPSDEDQDTQ LFKNNSFDNK NILTSSSPLS LHLSNRGLVL 240 SSNKSSSKIH ECSICSAEFT SGQALGGHMR RHRAPTGATN TTLSLTSPPV SAAFESHQQR 300 QQQQPRLPMK KQKSMLNLDL DLNLPAPSED DRHRETKFVF ASKQQQQEQQ QQERLRTQIL 360 VDCHY

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEAEAAGGDH NQEEVRILGC KEQHNNNINI MKGKRTKRLR PQSPIPFAIP RNSSSPEGGV  60
GGHRGGDGGE NNNDCINSTN LSPTTSAELF QDSTTSEEEE MANCLILLAQ GQSRAASSSP  120
DHHHQPHKHI TTSSRRFLEA TTTPAGKVAG AAGYYVYECK TCNRTFPSFQ ALGGHRASHK  180
KPKATIGDDH KNKHFGIGLL PPSDEDQDTQ LFKNNSFDNK NILTSSSPLS LHLSNRGLVL  240
SSNKSSSKIH ECSICSAEFT SGQALGGHMR RHRAPTGATN TTLSLTSPPV SAAFESHQQR  300
QQQQPRLPMK KQKSMLNLDL DLNLPAPSED DRHRETKFVF ASKQQQQEQQ QQERLRTQIL  360
VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-49	C2H2 family protein