PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011369.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 340aa    MW: 38152.7 Da    PI: 7.9323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011369.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.7e-0986110126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC +f   G C+ G++C++aHg
  PCP011369.1  86 YKTRLCVNFKS-GMCRNGENCNYAHG 110
                  9********99.*************8 PP
2zf-CCCH28.42.8e-09148170325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  ++lC+ f+ + +C+yGdrC+F H
  PCP011369.1 148 MKLCKKFYNGEECPYGDRCNFLH 170
                  689******66************ PP
3zf-CCCH38.42e-12229254126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ +  tG C++ ++C+FaHg
  PCP011369.1 229 WKTKLCNKWETTGKCPFSEKCHFAHG 254
                  8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MNFSDHSQFR PPQTPYNGGG SDVVNCWPPA FSMNNDDQHS QVEQQPFKRA RNSEERQSNP  60
MPYPPMNYTV QQPSAPVNKG ASNIFYKTRL CVNFKSGMCR NGENCNYAHG IEDIRHPPPN  120
WQELVSIRDE DRPLSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDS  180
GRFRENTAIS IGTTGAPVAH GSGSNPPEEN RLVNAGMDAS RGNVKPVYWK TKLCNKWETT  240
GKCPFSEKCH FAHGLTELQA PGGRTVEAEF LNTPPLPIPQ VVAAVNSSAT AIAALPALNN  300
DGGQRKKGML KWKGSKKINR IYADWLDDVP LVHQHNLVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-81C3H family protein